Sentences with phrase «encode project»

The NHGRI Division of Intramural Research will be developing a «portal» that will function as a single point of entry from which users can search and retrieve data from the ENCODE Project.

RFA HG -07-031, entitled A Data Coordination Center for the Encyclopedia of DNA Elements (ENCODE) Project (U41) solicited applications to develop, house, and maintain databases to track, store, and provide access to the different types of data generated as part of the ENCODE Project.

ENCODE Project Consortium.

Dr. Myers has been a long - time contributor to the ENCODE Project, The Pritzker Neuropsychiatric Research Consortium, and several other collaborative projects.

He led the analysis group for the ENCODE project, which is defining functional elements in the human genome.

Many of these were used by the ENCODE project to characterize the content and function of the human genome.

«We've come a long way,» said Ewan Birney, Ph.D., of the European Bioinformatics Institute, in the United Kingdom, and lead analysis coordinator for the ENCODE project.

ENCODE Project Consortium (2012).

«The ENCODE catalog is like Google Maps for the human genome,» said Elise Feingold, Ph.D., an NHGRI program director who helped start the ENCODE Project.

This month, the tremendous efforts of the ENCODE Project Consortium have borne fruit with 30 publications in Nature, Genome Research, and Genome Biology.

Yours truly generated the DHS data set by starting with all of the DHS sites from 125 different human cell types from the ENCODE Project.

We'll start with ChIP - seq data from the ENCODE project, find enhancers in embryonic stem cells, and conclude with a targeted CRISPR screen that can disrupt these enhancers.

Thus, the FANTOM5 dataset nicely complements the open chromatin, CHiP - Seq, and RNA - seq data generated by the ENCODE project.

Given that Berkeley has the good fortune of housing people with opposing (and even some with moderate) opinions about the ENCODE project, the Center for Theoretical and Evolutionary Genetics will soon be hosting a friendly discussion about the recent paper from Graur et al..

Nature's special issue dedicated to the Encode Project uses the Circos motif on its cover as well as the interactive Encode Explorer, which is available as an app at iTunes.

Studies from the ENCODE Project Consortium and other groups have revealed just how pervasively transcribed the genome appears to be.

The Epigenomics Roadmap, the ENCODE Project, and other functional genomics initiatives are just so vital as we expand our search for phenotypically - relevant variants outside of the coding regions.

I do get the feeling that the ENCODE project is the next layer in that foundational resource for other people to stand on top of and look further.

In the process, the ENCODE project is reinventing the vocabulary with which biologists study, discuss and understand human inheritance and disease.

Scientific American: The ENCODE project has revealed a landscape that is absolutely teeming with important genetic elements — a landscape that used to be dismissed as «junk DNA.»

The ENCODE project that tries to make sense of the flood of human genetic information and the CERN high - energy physics lab are examples, he told the meeting, «and the global burden of disease is in that category.

«Massive research consortia, like the ENCODE Project, have provided the scientific community with a trove of information about genomic function over the last few years,» says Siepel.

The latest research results are from the mouse ENCODE project, which is part of the ENCODE, or ENCyclopedia Of DNA Elements, program supported by the National Human Genome Research Institute (NHGRI), part of the National Institutes of Health.

This diagram illustrates a chromosome in ever - greater detail, as the ENCODE project drilled down to DNA to study the functional elements of the genome.

That is in stark contrast to suggestions by scientists with the ENCODE project that as much as 80 percent of the genome is functional.

«The complexity of our biology resides not in the number of our genes but in the regulatory switches,» Eric Green, director of the National Human Genome Research Institute and collaborator on the ENCODE project, said in a press briefing September 5.

Compared with the publication of draft human genome 12 years ago — and with initial findings from the ENCODE project published over the past several years — «the questions that we can now ask are more sophisticated,» Green said.

Proficient at developing a programming plan including project requirements and objectives, encoding project parameters, and conducting program testing to determine efficiency.

Not exact matches

David L. Schindler criticizes the liberal view of the human person that he sees encoded into the American project in First Things, to which Richard John Neuhaus responded with a more positive view of our national heritage, in which religious faith and a strong tradition of civic associations moderate the excesses of liberal individualism.

«ENCODE is a living project and the maps that are generated are constantly updated and improved, with information being added on new types of cells and tissues or new complementary genome assays.

To help uncover those functions and identify other important sequences, 35 research groups joined forces in 2003 to create the encyclopedia of DNA elements (ENCODE) project.

The pilot project tested a dozen or so of the most commonly used gene promoters (regions of DNA that facilitate gene transcription) and segments of DNA that encode ribosome - binding sites (sequences of messenger RNA that control protein translation) to determine whether they behave consistently in different cellular contexts.

Among other initiatives, his group contributes to ENCODE (Encyclopedia of DNA Elements), supported by NIH to define functional genomic elements; the DOE Systems Biology Knowledgebase (KBase) for data sharing and analysis; and the internationally funded 1000 Genomes Project on human genetic variation.

The work is part of the Encyclopedia of DNA Elements Project, also known as ENCODE.

Enormous projects such as ENCODE (for humans and mice) or modENCODE (for other lab model systems, such as the fly Drosophila or the worm C. elegans) have been devoted to collecting these data in order to analyse and interpret them in the framework of genomic data and to form hypotheses about functions and relations.

ENCODE's lead coordinator, Ewan Birney, and Nature editor Magdalena Skipper talk about the challenges of managing a colossal genetics project and what we've learnt about the human genome.

The latest chapter in our story is ENCODE; an ambitious project which aims to characterise all the functional element in the human genome.

In this video, ENCODE's lead coordinator, Ewan Birney, and Nature editor Magdalena Skipper talk about the challenges of managing this colossal project and what we've learnt about our genomes.

Despite confusion over how grants will be awarded and how ENCODE will proceed, participants were thrilled by the project — the first opportunity, they say, to dig deep into the human genome.

Now a U.S. - funded project, called the Encyclopedia of DNA Elements (ENCODE), has found that many of these bases do, nevertheless, play a role in human biology: They help determine when a gene is turned on or off, for example.

He was a fellow in an E.U. - funded Marie Curie Initial Training Network called Photonic Integrated Compound Quantum Encoding (PIQUE), with a project called «Integration of detectors with GaAs - based sources and circuits.»

ENCODE, the Encyclopaedia of DNA Elements, is the most ambitious human genetics project to date.

In late February, NHGRI released a call for applications for its newest genome project, the Encyclopedia of DNA Elements, or ENCODE.

«It's really a massive encoding capacity,» says Bisso, who started this project while on the technical staff at Lincoln Lab.

There has been a lot of debate, inside of ENCODE and outside of the project, about whether or not the results from our experiments describe something that is really going on in nature.

«Encode has fundamentally changed my view of our genome,» project leader Ewan Birney says.

Several years ago, the Defense Advanced Research Projects Agency asked researchers to submit ideas for ways to encode secret messages without the need for electronics.

Developmental genomics is central to understanding of ontogeny and many genetic and congenital anomalies, but was outside the scope of the landmark ENCODE and FANTOM projects.

«modENCODE will enable us to confirm what we're finding in the human genome by manipulating the fly and worm genomes in a precise and rapid way,» said Elise Feingold, PhD, the NHGRI program director in charge of the ENCODE and modENCODE projects.

The Encyclopedia of DNA Elements (ENCODE) project set out to identify all the functional elements within the human genome.