Mitalipov is director of the Center for
Embryonic Cell and Gene Therapy at OHSU.
On Aug. 3, the scientific article in Nature finally gave us some facts about the much - hyped experiments that involved editing the genomes of human embryos at the Center for
Embryonic Cell and Gene Therapy at Oregon Health and Science University.
Not exact matches
In SIF - seq, hundreds or thousands of DNA fragments to be tested for enhancer activity are coupled to a reporter
gene and targeted into a single, reproducible site in
embryonic cell genomes.
Base oxidation regulates
gene activity In cooperation with colleagues at LMU, as well as researchers based in Berlin, Basel
and Utrecht, Carell
and his group have now shown, for the first time, that a standard base other than cytosine is also modified in
embryonic stem
cells of mice.
The stem
cells, derived from human umbilical cord - blood
and coaxed into an
embryonic - like state, were grown without the conventional use of viruses, which can mutate
genes and initiate cancers, according to the scientists.
The team also found that ERAS, a tumorigenic
gene expressed in mouse
embryonic stem
cells and iPSCs, was mutated
and dysfunctional in the mole - rat iPSCs.
Further investigation, says Resar, showed that these unusual properties arise from the ability of HMGA1 to turn on several
genes involved in the Wnt pathway, a network of proteins necessary for
embryonic development
and stem
cell activity.
Early in
embryonic development, both mouse
and human placentas rely on the same set of ancient
cell - growth
genes.
When Kaufman, Zon
and colleagues looked to see what was different about these early cancer
cells, they found that crestin
and the other activated
genes are the same ones turned on during zebrafish
embryonic development — specifically, in the stem
cells that give rise to the pigment
cells known as melanocytes, within a structure called the neural crest.
This program normally shuts off after
embryonic development, but occasionally — for reasons not yet known — crestin
and other
genes in the program turn back on in certain
cells.
Although Oct4
and Sox2 were well - known players in
embryonic cells, «we thought this would be such a complicated problem, we never tested those
genes up front,» Thomson says.
Yamanaka's group
and two others followed up earlier this year with firmer evidence that these induced pluripotent stem (iPS)
cells faithfully mimicked the patterns of
gene activity
and cellular differentiation observed in
embryonic stem
cells.
They propose that normal tissue becomes primed for cancer when oncogenes are activated
and tumor suppressor
genes are silenced or lost, but that cancer develops only when a
cell in the tissue reverts to a more primitive,
embryonic state
and starts dividing.
As part of this effort, Dr. Weinstein
and his colleagues inserted a
gene for a protein that turns green the
cells that line the endothelium of selected
embryonic veins
and in the lymphatic system — the network of vessels through which immune
cells travel in the body.
Wondering why the third protein, an enzyme called p66, was not, despite being very similar to the other two, Pelicci's team knocked out the piece of the
gene that enabled it to code for p66, in order to make mice
and mouse
embryonic cells that lacked p66.
Derived mostly from human
embryonic kidney 293T (HEK293T)
and HeLa
cell lines, EdiGene Knockout (KO) Cell Lysates have been optimized through the use of genome editing technology and validated at the genomic level through PCR and Sanger - sequencing techniques to ensure the accuracy and knockout of the target g
cell lines, EdiGene Knockout (KO)
Cell Lysates have been optimized through the use of genome editing technology and validated at the genomic level through PCR and Sanger - sequencing techniques to ensure the accuracy and knockout of the target g
Cell Lysates have been optimized through the use of genome editing technology
and validated at the genomic level through PCR
and Sanger - sequencing techniques to ensure the accuracy
and knockout of the target
gene.
The results point to indirect genomic regulatory mechanisms which are important for
embryonic stem
cells and maintain
gene expression, say Riikka Lund
and Riitta Lahesmaa.
This finding contradicts the field's presumptions about this important
gene and its role in the differentiation of
embryonic stem
cells.
- Our results provide new insights into the mechanisms of how POLR3G
gene regulates stem
cell state, which in turn sheds light on the complex mechanisms with which human
embryonic stem
cells both self - renew
and maintain the ability to differentiate.
Mitchell
and her colleagues eliminated this possibility when they deleted these nearby regions in the genome of mice
and found there was no impact on the
gene's ability to be turned on in
embryonic stem
cells.
A large body of research has reported that Nanog is allelically regulated — that is, only one copy of the
gene is expressed at any given time —
and fluctuations in its expression are responsible for the differences seen in individual
embryonic stem (ES)
cells» predilection to differentiate into more specialized
cells.
«We studied how the Sox2
gene is turned on in mice,
and found the region of the genome that is needed to turn the
gene on in
embryonic stem
cells,» said Professor Jennifer Mitchell of U of T's Department of
Cell and Systems Biology, lead invesigator of a study published in the December 15 issue of
Genes & Development.
Thorough study of changes in the
gene activity regulation mechanism showed that reprogrammed
and embryonic stem
cells are similar.
And so they have long sought haploid
embryonic stem
cells, which can become any kind of tissue but contain just one set of
genes, like a sperm or egg.
But when physiologist H. Lee Sweeney of the University of Pennsylvania School of Medicine in Philadelphia
and his colleagues put this faulty
gene into
embryonic quail muscle
cells growing in lab dishes, the
cells made a shortened version of the protein
and incorporated it into their contractile machinery.
Three teams of scientists reported earlier this year that they had directly reprogrammed adult mouse skin
cells into
embryonic cells, although the process involved viruses
and cancer - causing
genes.
Schöler
and his team looked at
embryonic mouse clones that were just a few days old to see when
and where the Oct4
gene — which helps
embryonic cells decide where to go
and what to do — is active.
IPSC's are derived from the donated skin or blood
cells of adults
and, with the reactivation of four
genes, are reprogrammed back to an
embryonic stem
cell - like state.
Not only did a high percentage of
embryonic cells get repaired, but also
gene correction didn't induce any detectable off - target mutations
and genome instability — major concerns for
gene editing.
In order to find the
genes that guide that migration, geneticist Ruth Lehmann of the Howard Hughes Medical Institute at New York University Medical School
and her colleagues used chemicals to cause mutations in thousands of adult fruit flies then screened their
embryonic offspring for lost or misguided germ
cells.
They have learned how to turn on
and off essential
genes and how to transform
embryonic stem
cells into retinal
cells, which can be transplanted into mice to restore vision.
They hope to identify the complete set of DNA binding sites
and corresponding target
genes for the regulons in
embryonic stem
cells and a subset of the
cells they differentiate into.
By transferring the
gene for melanopsin into human
embryonic kidney
cells, synthetic biologist Martin Fussenegger of the Swiss Federal Institute of Technology in Zurich
and colleagues made these
cells light - sensitive as well.
The researchers took skin
cells from the tails of sickle
cell mice
and inserted copies of four
genes that made the
cells take on the characteristics of
embryonic stem
cells.
Tumors without that
gene became much less differentiated
and more similar to
embryonic cells.
The mouse
embryonic stem
cell knockout resource provides a basis for the characterization of relationships between
genes and phenotypes.
It turns out that iPS
cells and embryonic stem
cells have differing patterns of methylation, a modification of DNA that can alter how
genes behave even if the underlying DNA sequence remains the same.
The Mouse Molecular Technologies team provide high - throughput genotyping
and characterisation of mutant mouse strains created either by targeted
embryonic stem
cells (ESC) or CRISPR / Cas9
gene editing in single -
cell zygotes.
Neuronal developmental
gene and miRNA signatures induced by histone deacetylase inhibitors in human
embryonic stem
cells.
A further 25 days in medium containing FGF2
and Noggin mediated the derivation
and expansion of RPCs which had a similar global
gene expression pattern to
cells of the
embryonic day 14 (E14) mouse retina.
In the new research, Pollen
and co-first author Tomasz Nowakowski, PhD, also a postdoctoral researcher in the Kriegstein lab, partnered with Fluidigm Corp. to develop a microfluidic approach to map out the transcriptional profile — the set of
genes that are actively producing RNA — of
cells collected from the VZ
and SVZ during
embryonic development.
Yamanaka
and Takahashi began their search by studying
embryonic stem
cells in the hope of identifying the
genes that underlie essential stem
cell characteristics, such as pluripotency
and proliferation, a
cell's ability to replicate itself.
It concentrates on analysis of
gene function at all levels: the
gene and its product, the
cell and cellular interactions,
embryonic tissues
and the entire animal.
Probably a number of
embryonic genes, after being turned off for decades, are reexpressed in cancer
cells, enabling those
cells to regain their
embryonic capacity to move around
and invade other tissues.»
The Repository of mouse ES
cell lines, strains
and vectors generated by the trans - NIH KOMP initiative that aims to generate a public resource comprised of mouse
embryonic stem (ES)
cells containing a null mutation in every
gene in the mouse genome.
The
gene, known as gata5, acts in
embryonic cells, which are primordial, unspecialized
cells that form in the earliest stage of
embryonic development
and are genetically programmed to evolve into one of many specialized
cell types, such as skeletal muscle
cells, nerve
cells, blood
cells, skin
cells,
and liver
cells.
April 2012 - New research: Illuminating
embryonic stem
cells Collaboration between two EU funded projects «Heroic»
and «EuroSyStem», has provided new insights into
embryonic stem
cells The teams used next generation sequencing technology to examine two key properties of the
cells that influence their identity
and behaviour:
gene expression
and gene regulation.
BRD7, a novel PBAF - specific SWI / SNF subunit, is required for target
gene activation
and repression in
embryonic stem
cells.
Familial Dysautonomia (FD) Human
Embryonic Stem
Cell Derived PNS Neurons Reveal that Synaptic Vesicular
and Neuronal Transport
Genes Are Directly or Indirectly Affected by IKBKAP Downregulation.
My post-doctoral work on the identification of
genes required for normal germ line development
and fertility led to the discovery that the germ line is exquisitely sensitive to mutations in components of the mitotic spindle that have the potential to lead to aneuploidy — this sensitivity may also extend to
embryonic and adult stem
cells.