Sentences with phrase «genome size from»

Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

In agreement with previous reports on Pseudomonas spp. (2), these genomes varied in genome size from 5.9 - 6.8 Mb, and the number of CDSs ranged from 5,178 to 6,009.

Using Eq 2 and solving for GA with extant genome sizes from Table 1 and gain and loss rates calculated by the recent transposon method (Table 2), we get estimated ancestral genome sizes of 2.64 Gb and 2.66 Gb for human and mouse respectively.

Not exact matches

Virus length and genome size for a representative from each of two recognized giant virus families (mimivirus and marseillevirus families) and eight potential families are shown.

Led by postdoctoral researcher Dr Violeta Simon - Porcar, they measured the plant's genome size and surveyed 30 populations of monkeyflowers from Shetland and across the United Kingdom.

By funding this work, the NHGRI hopes to bring the cost of sequencing a mammalian sized genome down from $ 10 million to $ 1000 in the next 10 years — cheap enough for patients to have their genome sequenced before they receive genome - tailored treatments.

«When the parasite moved from the intestinal tract to the urogenital tract, it increased in size, which may have something to do with the considerably expanded genome,» she says.

This snippet of the human genome, color coded for major features, comes from a beach - towel - sized poster that represents all 2.9 billion bases.

The researchers speculate that the genome swelled in size as T. vaginalis made the bold move from its ancestral home in the gut to its new domain in the genitals, a migration that is also entirely mysterious.

During genome evolution the spectrum of possible mutations is extremely broad, ranging from single nucleotide substitutions all the way up to Mb - sized rearrangements and translocations.

The paper maps passenger pigeon genetic data to a published genome from the Rock dove, Columba livia, and uses these data to infer changes in their population size through time.

These pipelines have to be able to handle very heterogenous data from high - AT haploid parasites through two orders of magnitude in genome size up to human genome data.

Applying high - throughput sequencing technologies to obtain sequences from most of the genome, we calculated that the passenger pigeon's effective population size throughout the last million years was persistently about 1/10, 000 of the 1800's estimated number of individuals, a ratio 1,000 - times lower than typically found.

That Nanopore sequencing has the ability to revolutionize sequencing is recently demonstrated by KeyGene's publication: The megabase - sized fungal genome of Rhizoctonia solani assembled from nanopore reads only.

Two strains of Bd have been sequenced: JEL423, taken from Phyllomedusa lemur in Panama, and JAM81, taken from Rana muscosa in California, U. S. A. Bd genome size is estimated to be 23.7 Mb for strain JEL423 and 24.3 Mb for strain JAM81, encompassing about 9000 genes (Rosenblum et al. 2008).

For the mouse genome, which is a large and repeat - rich genome, the input dataset was designed to include a high proportion of paired end sequences of various size selected inserts, from 2 - 200 kbp lengths, into various host vector templates.

Raw single reads (and their mate pairs) from deep sequencing libraries corresponding to 3 XMRV - positive samples [VP35, 14,589,296 reads; VP42, 14,573,990 reads; and VP62 (2006), 18,308,352 reads] and 3 XMRV - negative samples [VP10, 5,270,536 reads; VP30, 4,378,204 reads; and VP62 (2012), 3,985,692 reads] were then stripped of adapter and primer sequences and aligned to the CRS mitochondrial genome using BLASTn (word size = 11, E-value = 1 × 10 − 10).

These non-significant results are arguably due to the study's relatively small sample size for a genome - wide association study that requires multiple testing (ranging from N = 372 — 436 in the high and low trait comparison groups), making it unclear whether the same genetic variants are involved in these sub-domains.