Sentences with phrase «nanopore minion»

Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology.

Portable DNA sequencers such as the Oxford Nanopore MinION device have the potential to be truly disruptive technologies, facilitating new approaches and analyses and, in some cases, taking sequencing out of the lab and into the field.

Translating the Oxford Nanopore MinION sequencing technology into medical microbiology requires on - going analysis that keeps pace with technological improvements to the instrument and release of associated analysis software.

Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes

Long - read sequencing technologies such as Pacific Biosciences and Oxford Nanopore MinION are capable of producing long sequencing reads with average fragment lengths of over 10,000 base - pairs and maximum lengths reaching 100,000 base - pairs.

In this talk I will cover the highs and lows of being part of the Oxford Nanopore MinION Access Programme.

High - quality de novo genome assembly of the Dekkera bruxellensis UMY321 yeast isolate using Nanopore MinION sequencing

With a given read depth of 31X, the assemblies from both Pacific Biosciences and Oxford Nanopore MinION show excellent continuity and completeness for the 16 nuclear chromosomes, but not for the mitochondrial genome, whose reconstruction still represents a significant challenge.

Motivation: The highly portable Oxford Nanopore MinION sequencer has enabled new applications of genome sequencing directly in the field.

Motivation: The Oxford Nanopore MinION sequencer, currently in pre-release testing through the MinION Access Programme (MAP), promises long reads in real - time from a cheap, compact, USB device.

The Oxford Nanopore MinION Mk1B is a portable 90 g device that sequences DNA directly at 450 bases / second generating sequence reads in excess of 400 kb.

Recently, genome assemblies using Oxford Nanopore MinION data have attracted much attention due to the portability and low cost of this novel sequencing instrument.

The recently introduced Oxford Nanopore MinION platform generates DNA sequence data in real - time.

In this manuscript we evaluate the potential for microbiome characterization by sequencing of near - full length 16S rRNA gene region fragments using the Oxford Nanopore MinION (hereafter Nanopore) sequencing platform.

The Oxford Nanopore MinION is a portable single - molecule DNA sequencer that can sequence long fragments of genomic DNA.

We have sequenced the CEPH1463 (NA12878 / GM12878, Ceph / Utah pedigree) human genome reference standard on the Oxford Nanopore MinION using 1D ligation kits (450 bp / s) using R9.4 chemistry (FLO - MIN106).

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data.

Results The assembly of long reads generated using the Oxford Nanopore MinION ® instrument is challenging as existing assemblers were not implemented to deal with long reads exhibiting close to 30 % of errors.

Not exact matches

The other cargo includes a USB - stick - sized DNA sequencer called MinION, made by UK firm Oxford Nanopore Technologies.

In recent years, genome sequencers have dramatically shrunk in size; Oxford Nanopore's MinION, for example, weighs only 85 grams and fits in your hand.

In 2014, Oxford Nanopore rolled out the first commercial nanopore sequencer, a handheld device calledNanopore rolled out the first commercial nanopore sequencer, a handheld device callednanopore sequencer, a handheld device called MinION.

The research team tested a new device called MinION, produced by Oxford Nanopore Technologies Ltd..

Background The MinION ™ is a new, portable single - molecule sequencer developed by Oxford Nanopore Technologies.

This study aimed to assess the feasibility of using the Oxford Nanopore Technologies (ONT) MinION long - read sequencer in reconstructing fully closed plasmid sequences from eight Enterobacteriaceae i...

A reference bacterial genome dataset generated on the MinION ™ portable single - molecule nanopore sequencer

Oxford Nanopore has promised to release the MinION, a disposable USB pocket - sized nanopore sequencer later thNanopore has promised to release the MinION, a disposable USB pocket - sized nanopore sequencer later thnanopore sequencer later this year.

Early MinION ™ nanopore single - molecule sequencing technology enables the characterization of hepatitis B virus genetic complexity in clinical samples — Virginie Sauvage — PLOS ONE

We currently operate several different types of Illumina sequencers and MinIon sequencers from Oxford Nanopore Technologies offering researchers access to cutting edge technology for high throughput sequencing for a wide range of applications.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or laptop (MetaPORE).

Oxford Nanopore introduces DNA «strand sequencing» on the high - throughput GridION platform and presents MinION, a sequencer the size of a USB memory stick

The MinION ™ measures the change in current resulting from DNA strands interacting with a charged protein nanopore.

We developed a portable system for metagenomic analyses consisting of nanopore technology - based sequencer, MinION, and laptop computers, and assessed its potential ability to determine bacterial compositions rapidly.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or la

A novel diagnostic method for malaria using loop - mediated isothermal amplification (LAMP) and MinION ™ nanopore sequencer

The MinION ™ nanopore sequencer was recently released to a community of alpha - testers for evaluation using a variety of sequencing applications.

The researchers accomplished their feat using the MinION nanopore sequencer, reading almost a hundred billion base pairs of data and analyzing huge chunks of DNA.

We report a third - generation sequencing assay on nanopore technology (MinION) for detecting BCR - ABL1 KD mutations and compare the results to a Sanger sequencing (SS)- based test in 24 Philadelphia - positive (Ph +) leukemia cases.

The Oxford Nanopore Technologies MinION ™ sequencer is a small, portable, low cost device that is accessible to labs of all sizes and attractive for in - the - field sequencing experiments.

Non-invasive diagnosis of cutaneous leishmaniasis by the direct boil loop - mediated isothermal amplification method and MinION ™ nanopore sequencing

Motivation: Oxford Nanopore's MinION device has matured rapidly and is now capable of producing over one million reads and several gigabases of sequence data per run.

The MinION device by Oxford Nanopore is the first portable sequencing device.

Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION ™ portable nanopore sequencer

We report the sequencing and assembly of a reference genome for the human GM12878 Utah / Ceph cell line using the MinION (Oxford Nanopore Technologies) nanopore seNanopore Technologies) nanopore senanopore sequencer.

The Oxford Nanopore Technologies (ONT) MinION is a new sequencing technology that potentially offers read lengths of tens of kilobases (kb) limited only by the length of DNA molecules presented to it.

Dr Andrew Kilianski presents a talk for the MinION Community on Real - time Genomic Characterization of Viral Threat Agents using Nanopore Sequencing.

The MinION is a portable device that uses nanopore technology and can sequence long DNA molecules.

Oxford Nanopore Technologies» nanopore sequencing device, the MinION, holds the promise of sequencing ultra-long DNA fragments Nanopore Technologies» nanopore sequencing device, the MinION, holds the promise of sequencing ultra-long DNA fragments nanopore sequencing device, the MinION, holds the promise of sequencing ultra-long DNA fragments > 100kb.

The MinION is a portable single - molecule DNA sequencing instrument that was released by Oxford Nanopore Technologies in 2014, producing long sequencing reads by measuring changes in ionic flow when single - stranded DNA molecules translocate through the pores.

MinION Nanopore Sequencing Enables Correlation between Resistome Phenotype and Genotype of Coliform Bacteria in Municipal Sewage.

Unlike other methods, which read chunks of DNA perhaps a hundred or so base pairs in length, the MinION can read sequences as long as 882,000 base pairs in length using the nanopore technology.