Analysis of
Passenger Pigeon population genomics is completed and the findings released in prepublished format on Cold Spring Harbor Laboratory's biorxiv preprint server.
By comparing the genes from each bird, Hung's team was able to determine how the overall
passenger pigeon population had changed over the years.
All this unfettered felling and trapping meant that by the end of the 19th century — around the time that
passenger pigeon populations began to plummet — the wild turkey was in trouble.
It is important to the de-extinction effort because it shows (as our data do)
that passenger pigeon populations fluctuated in size through time, as resource availability changed.
As more and more hunters took advantage of this cheap flying protein,
passenger pigeon populations plummeted.
Not exact matches
With this map of genetic variation in hand, the scientists could then estimate how big the
population of
passenger pigeons once was — typically, a small
population will have less genetic variation than a larger one because it derives from a smaller pool of ancestors who bred successfully.
But the fact that
passenger pigeons persisted at relatively small
population sizes gives fresh hope to efforts to bring them back — so - called de-extinction.
In the case of the
passenger pigeon, Hung and his colleagues concluded that the
population of breeding birds was roughly 330,000 on average, falling to as few as 50,000 birds at points in the last million years.
This mismatch between these numbers and 1880 estimates of at least three billion suggests that the
passenger pigeon may have been what is known to ecologists as an «outbreak» species, like locusts, that boom and bust with changes in conditions, rather than a species that experiences a singular
population explosion, as Homo sapiens has in the last 200 years.
It's also unclear which biological properties of the
passenger pigeons made them so prone to
population fluctuations.
We used DNA sequences from 42
Passenger Pigeons spanning 4,000 years of history to reconstruct historic
population trends.
This result suggests that the
passenger pigeon was not always super abundant but experienced dramatic
population fluctuations, resembling those of an «outbreak» species.
The paper maps
passenger pigeon genetic data to a published genome from the Rock dove, Columba livia, and uses these data to infer changes in their
population size through time.
Based on our results, we hypothesize that ecological conditions that dramatically reduced
population size under natural conditions could have interacted with human exploitation in causing the
passenger pigeon's rapid demise.
The
passenger pigeon was once the most abundant bird in the world, with a
population size estimated at 3 — 5 billion in the 1800s; its abrupt extinction in 1914 raises the question of how such an abundant bird could have been driven to extinction in mere decades.
Our study illustrates that even species as abundant as the
passenger pigeon can be vulnerable to human threats if they are subject to dramatic
population fluctuations, and provides a new perspective on the greatest human - caused extinction in recorded history.
Applying high - throughput sequencing technologies to obtain sequences from most of the genome, we calculated that the
passenger pigeon's effective
population size throughout the last million years was persistently about 1/10, 000 of the 1800's estimated number of individuals, a ratio 1,000 - times lower than typically found.
Therefore unique diversity is not evolutionarily significant for discovering the traits that make a
passenger pigeon (though they will be important later for developing genetic diversity in a viable
population).
In collaboration with Ben Novak's dietary ecology research, Holland has conducted several field experiments to identify the necessary
population densities of
Passenger Pigeons and to gain insight regarding seed dispersal.
Project leader Ben Novak begins researching the historical ecology of the
Passenger pigeon, starting with
population genetics studying the paleoecology of eastern N. American forests.
Their analysis of the
passenger pigeon's genome is the first study to reveal how natural selection and genetic recombination shape a genome in an abundant
population, as was the
passenger pigeon's before the arrival of European settlers to North America.
The
Passenger Pigeon's genome may hold the answers to the true minimum
population size necessary for a viable
population.
Through studying
population genetics, we can evaluate historic accounts with a more accurate understanding of
Passenger Pigeon ecology.
The recent trends in
population size were gained using complete mitochondrial genome sequences of of 41
passenger pigeons (three of which date to 4,000 years old).
This low diversity means that
passenger pigeons would have needed to be conserved as a one contiguous
population, not a fragmented one.
The idea is that
Passenger Pigeons evolved to live in huge flocks and became dependent on their large flocks, meaning they could not produce enough offspring to survive unless there were billions of them, either for social reasons (they would not breed in small flocks), for predator reasons (they could not satiate predators without huge flocks), or for resource reasons (they could not find adequate food sources in small
populations).
Our current
population genetics analyses show that the
Passenger Pigeon was stably abundant for tens of thousands of years, before humans arrived in North America.
It was Dr. Beth Shapiro, an expert in ancient DNA and ancient
population genetics at UC Santa Cruz, who first sequenced
passenger pigeon DNA in 2002.
The overall goal of this phase is to produce a parent generation of chimeras and a first generation stock
population of fully edited birds — the new
passenger pigeons.
Therefore unique diversity is not evolutionarily significant for discovering the traits that make a
passenger pigeon (though they will be important later for developing genetic diversity in a viable
population).
The book's author, H. Bruce Franklin, compares menhaden to the
passenger pigeon and related to me recently how his research uncovered that
populations were once so large that «the vanguard of the fish's annual migration would reach Cape Cod while the rearguard was still in Maine.»
Seeing how much
passenger pigeon DNA varied among individuals over time can give him and his colleagues some clues to the size of the
pigeon population over the past few thousand years.