A new study has found strong evidence that tobacco use can chemically modify and affect
the activity of genes known to increase the risk of developing cancer.
In the new study, published online March 27, 2018, in Cell Reports, a team led by UCSF's David Raleigh, MD, PhD, found that increased
activity of a gene known as FOXM1 appears to be responsible for the aggressive growth and frequent recurrence of these tumors.
Not exact matches
These changes,
known as epigenetic modifications, control the
activity of our
genes without changing the actual DNA sequence.
In the journal Cell on July 27, researchers show how this DNA variant enhances the
activity of a
gene called endothelin - 1 (EDN1), which is
known to promote vasoconstriction and hardening
of the arteries.
Berninger and others have previously shown that Sox2, Ascl1, and other transcription factors — proteins that bind to specific DNA sequences to control the
activity of genes — can induce the nonneuronal «support cells»
known as glia to turn into neurons.
But we also
know the
activity of our own
genes can be changed by our environment, through epigenetic mechanisms.
They used a somewhat bizarre technique in which two mice were sutured together in such as way that they shared a circulatory system (
known as parabiosis), and found old mice joined to their youthful counterparts showed changes in
gene activity in a brain region called the hippocampus as well as increased neural connections and enhanced «synaptic plasticity» — a mechanism believed to underlie learning and memory in which the strength
of neural connections change in response to experience.
Additional experiments revealed that SIRT1 stymies PPARγ, which is
known to jack up the
activity of several
genes that boost fat production.
Within the duplicate regions, Carmona - Mora and her colleagues discovered many switches,
known as enhancers, important for controlling
activity of genes.
These tags are detected and measured using a sensitive DNA analysis technique
known as massive, parallel sequencing, providing a quantitative readout
of the
gene's
activity levels.
We
know that Hox
genes encode transcription factors that control the
activity of other
genes, but we found that digit - innervating motor neurons also express other
genes, such as FIGN and CNEP4], and we still don't
know the function
of any
of these other
genes.
When these birds sing, the
activity of a master
gene called FoxP2 declines in a key region
of the brain involved in vocal control
known as Area X.
Compared with living people, Neandertals and ancient Siberians
known as Denisovans had slightly different patterns
of DNA methylation — a chemical modification
of DNA that doesn't change the information in
genes but helps control
gene activity.
The puffy appearance was a
known sign that
genes were being activated in those regions to give rise to their encoded proteins, so those sites
of activity became
known as the heat shock loci.
Scientists have
known for years that the genome is riddled with sequences that control
gene activity and is not just made up
of genes.
They play a key part in regulating the
activity of genes in many species, from yeast to humans Fewer than 10 years ago no one
knew they existed
Niakan's group focused on a
gene called OCT4 (also
known as POU5F1), a master regulator
of gene activity, which is important in mouse embryo development.
They sent soil samples for DNA testing, looking for matches with particular
genes known to be found in microbes and fungi; they tried to stimulate microbial growth on a wide variety
of substances and then count the cells produced; and they used highly sensitive radiorespiration
activity assays, which involve feeding the soil microorganisms a food source which has been labelled with radioactive carbon, which can then be used to detect if the microorganisms are active.
Many more people, however, carry a low -
activity variant
of the
gene,
known as MAOA - L.
The team found changes in the
activity of nearly 40
genes in three brain regions
known to be associated with depression and anxiety (Science Signaling, doi.org/b4rz).
The group took the first step toward their goal
of a novel engineering strategy for yeast by creating what is
known as a cDNA library: a collection
of over 90 %
of the
genes from the genome
of baker's yeast (Saccharomyces cerevisiae), arranged within a custom segment
of DNA so that each
gene will be, in one version, overactive within a yeast cell, and in a second version, reduced in
activity.
They found over 700
genes which, when inhibited, brought down ENaC
activity, including a number
of genes no - one
knew were involved in the process.
To that end, they examined in mouse embryos the global distribution
of an epigenetic mark
known to play a critical role in regulating the
activity of genes.
They assessed
gene activity at time points
known to correspond with key phases
of disease: the «induction phase,» the time before the peak level
of photoreceptor cell death; the «execution phase,» when the highest rates
of photoreceptor cell death occur; and the «chronic phase,» during which photoreceptor cell death continues at somewhat reduced levels.
Tet2 is a type
of cellular enzyme
known as an epigenetic regulator — responsible for making specific chemical annotations to regions
of DNA that alter the
activity of many different
genes.
Research suggests that random fluctuations in
gene activity could explain some instances
of the phenomenon,
known as partial penetrance, which likely plays a role in some human diseases.
UM270 was the only strain possessing
genes involved in the synthesis
of indole -3-acetic acid (IAA), the most common auxin, and phenylacetic acid (PAA), also
known for its antimicrobial
activity (23).
«Because the Met - SRC complex regulates a
gene that controls reproductive development in crustaceans, we
know that such
activity means there is a significant likelihood
of environmental toxicity — enough to make it a priority for in - depth toxicity testing,» LeBlanc says.
Importantly, for the maintenance
of healthy plaque pH,
gene transcription
activity of known and previously unrecognized pH - neutralizing pathways was associated with the genera Lactobacillus, Veillonella and Streptococcus during the pH recovery phase.
Cyanobacteria possess one
of the simplest
known circadian clocks — the KaiABC system, a complex
of proteins that undergoes a 24 - hour biochemical cycle, which triggers oscillations in
gene expression and physiological
activity.
It's also high in tomatidine, which has been shown to boost muscle mass in mice by reducing the
activity of a
gene called ATF4,
known for inhibiting muscle protein synthesis.