Sentences with phrase «against a protein database»
With an archive, researchers first cluster, then search the clusters against a protein database to generate Peptide - Cluster Matches (PCMs).
https://www.pnnl.gov/ Not exact matches
Identifications were made with one or more significantly matching peptides by Mascot (p < 0.05) against the Arabidopsis protein database TAIR10 (Parsons HT, et al., 2012).
The identified homologs were verified by BLASTing against the human protein database, which should identify human BOULE as the top hit sequence with highest similarity.
In contrast to the amino acid divergence and the ratio of non-synonymous to synonymous substitutions per site that we examined in the present investigation, they analyzed the proportion of most diverged genes by using the E value of the best hit when searching annotated honeybee genes against the Genbank non-redundant protein database.
All sequencing reads were compared against the non-redundant protein database (nr) at NCBI GenBank using BLAST 2.2.1833 using the E-value cut - off 10 − 5 (best hit used).
The classification was assigned based on BLAST comparison against the NCBI GenBank non-redundant protein database (nr).