Sentences with phrase «analysis pipeline»

This includes raw data and metadata for projects, experiments, and samples submitted by investigators, as well as derived analyses and quality metrics automatically generated from running vetted secondary analysis pipelines.

The CNAG provides robust state of the art data analysis pipelines for Mendelian disease gene discovery, complex disease gene identification, somatic variant identification, de novo genome assembly, differential gene expression, identification of novel spliced isoforms, cytosine - methylation analysis and epigenetic analysis among others.

REXAN provides access to high performance analytical components that can be quickly assembled into high - speed data analysis pipelines for different experimental instruments.

The data analysis pipeline includes more than half of the CNAG staff and it is strongly supported by an extensive informatics infrastructure.

NGI provides support and access to the latest technologies for massively parallel DNA sequencing as well as standardized analysis pipelines.

This proof - of - principle study highlights the feasibility of applying a semiautomated MRI analysis pipeline for atlas - based texture feature extraction from T2 - weighted MRI at the epicenter of acute spinal cord injury (SCI).

The Human Cell Atlas Analysis Working Group will identify which analysis pipelines will be run, including at least one vetted pipeline for each anticipated type of data (e.g. sequencing, imaging, etc).

Utilize turn - key analysis pipelines and visualization tools for investigating variation within whole genome, exome and single cell samples.

Based at the Wellcome Trust Sanger Institute, Jim is responsible for the design, management and implementation of the primary analysis pipelines that produce DNA sequence and genotype data for a number of CGGH collaborations, including MalariaGEN and TRAC.

Differential expression analysis pipeline including proprietary GEM - split - mapper and Flux Capacitor for gene and isoform quantification

As bioinformatics approaches can only provide partial solutions, a functional analysis pipeline, based on primary (fibroblast) cell cultures, induced Pluripotent Stem cells (iPS) or simple model organisms, is truly essential.

The job will entail working on a team of 20 software engineers on next - gen sequence analysis pipelines, focusing on utilizing the information management capabilities of the analysis system to migrate data appropriately between different tiers of storage and eliminate data duplication.

For Analysis Pipelines prior to 2.0, data included a separate data format version number and software version number.

Genome sequencing of the TRAC clinical samples has now been completed, generating terabytes of data that were processed by the sequence - analysis pipeline team led by Jim Stalker, to produce quality - controlled information about many thousands of variants for each sample.

R Prabhakar has been with Strand right from its inception and currently manages the infrastructure of Strand's genomics analysis pipeline and the overall computational infrastructure at Strand.

npReader (jsa.np.f5reader) is a program that extracts Oxford Nanopore sequencing data from FAST5 files, performs an initial analysis of the date and streams them to real - time analysis pipelines.

Diagram of key components of the open - source data coordination platform, including [1] a data ingestion service, [2] a synchronized data store with multiple cloud replicas [3] a collection of secondary analysis pipelines for basic data processing and [4] a collection of tertiary portals for analyses, visualizations, and rich forms of data access.

Finally, a training focused on advanced data analysis pipelines will be performed at FlowCyTech (CEA, Fontenay - aux - Roses).

He is working at the other end of the analysis pipeline, developing methods to extract meaning from the increasing amount of genetic data, ancient and modern, that his wet lab colleagues are generating.

ET: «What this data analysis pipeline, moreover, creates is motivation to look for similar forms of gene loss in other types of symbioses, such as that between humans and their gut microbiomes.

The results show that exploratory application of five machine - learning algorithms integrated into the analysis pipeline can classify patients by degree of neurologic impairment with variable accuracy and identify potential prognostic texture features.

As currently conceived, this data coordination platform will provide four key components: ingestion services for submission of data; synchronized data storage across multiple clouds; standardized secondary analysis pipelines; and portals for data access, tertiary analysis, and visualization.

Data integration and analysis is so important, but it is only effective if the analysis pipeline is designed with knowledge of how data - collecting machines work.

In order to use these data sets to build gene models we created an analysis pipeline consisting of five steps:

Hands on experience and leadership in genomics, big data management, analysis pipelines, interpretation and application development in academic, government and commercial settings.

MeDICi is a middleware platform (computer software that connects software components or applications) that makes it easy to integrate separate codes into complex applications that operate as a data analysis pipeline.

The HCA Data Store will provide a multi-site cloud - based storage system for all Human Cell Atlas data, including raw data, metadata, and certain forms of derived data from vetted secondary analysis pipelines.

Analysis pipelines, including the best - practice pipelines used at the NGI, typically produce log files giving a summary of their analysis.

The goal is to develop more integrated R&D efforts, analysis pipelines and full services, including sample processing, sequencing, data analysis and interpretation.

The analysis pipeline group has a position open for a software engineer in data management & compression.

TGI won a four - year, $ 805,000 grant to develop its analysis pipelines into A Turnkey system for High - Throughput Variant Discovery and Interpretation (NIH project link), one of several informatics grants reported by GenomeWeb's BioInform last month.

Computer scientists at Pacific Northwest National Laboratory have rolled out the MeDICi Integration Framework, a middleware platform (computer software that connects software components or applications) that makes it easy to integrate separate codes into complex applications that operate as a data analysis pipeline.

A key strength of the Community Project is that it connects a diverse, global community of researchers to a sophisticated DNA sequencing and analysis pipeline — a massive infrastructure which took considerable effort to develop.

In order to focus on these problematics, state - of - the - art lectures on innovative sampling methods and data analysis pipelines will be presented.

To that end, practical exercises are performed on real data, and JCVI frequently shares virtual machine images and instructions for setting up the same data analysis pipelines and tools that were employed during training sessions.

Doing so requires, among other things, robust automation of lab processes and analysis pipelines.