Sentences with phrase «analysis pipelines for»

REXAN provides access to high performance analytical components that can be quickly assembled into high - speed data analysis pipelines for different experimental instruments.

Diagram of key components of the open - source data coordination platform, including [1] a data ingestion service, [2] a synchronized data store with multiple cloud replicas [3] a collection of secondary analysis pipelines for basic data processing and [4] a collection of tertiary portals for analyses, visualizations, and rich forms of data access.

This proof - of - principle study highlights the feasibility of applying a semiautomated MRI analysis pipeline for atlas - based texture feature extraction from T2 - weighted MRI at the epicenter of acute spinal cord injury (SCI).

Not exact matches

«This incident has really contributed to changing the strategic environment in which these key pipeline infrastructure decisions are going to be made,» says Mark McClelland, head of North American research for risk - analysis firm Maplecroft.

The 1,900 - kilometre proposed pipeline has been in limbo for more than seven years, awaiting a series of U.S. reviews that have dragged on more than five times longer than average, according to a recent Associated Press analysis.

Here's the problem with that analysis — KXL isn't really a level shift in the supply curve, and thus the authors don't actually make the case for there to be any global price effect associated with the pipeline.

An analysis of the pipeline plan for the State Department concluded that if the pipeline was rejected, oil sands producers would instead turn to railways for shipments to the United States.

Chattam House recently came out with an information about the data used in analysis of investment pipelines for 2007 - 2013 and beyond and in that report, it was revealed that an adjusted number of China controlled mining assets in Africa could be even more impressive due to the fact that deals are not always made public.

Recently I did an analysis looking at pipeline replacement rates for different cities between 2004 and 2013.

ET: «What this data analysis pipeline, moreover, creates is motivation to look for similar forms of gene loss in other types of symbioses, such as that between humans and their gut microbiomes.

As currently conceived, this data coordination platform will provide four key components: ingestion services for submission of data; synchronized data storage across multiple clouds; standardized secondary analysis pipelines; and portals for data access, tertiary analysis, and visualization.

This consortium developped new statistical methods for pipeline design and data analysis aimed at detecting reproducible phenotypes with high power.

The phenotyping pipeline that will be used within INFRAFRONTIER - I3 builds on the EUMODIC pipeline and uses a cohort of seven female and seven male mutant mice for a comprehensive first - line phenotyping analysis.

Utilize turn - key analysis pipelines and visualization tools for investigating variation within whole genome, exome and single cell samples.

EzMap: a simple pipeline for reproducible analysis of the human virome — Patrick Czeczko — Bioinformatics

This includes raw data and metadata for projects, experiments, and samples submitted by investigators, as well as derived analyses and quality metrics automatically generated from running vetted secondary analysis pipelines.

Ebba is a Master student from the «X-program» (Engineer program in Molecular Biotechnology) from Uppsala University, and she will work on building efficient bioinformatics pipelines for efficient analyses of large amounts of next - generation sequencing data.

The ICS is a large - scale facility open to the community that ensures the generation of mouse models à la carte, the validation of genetic models, the expansion and preservation and distribution of models with the housing department, and offers in its phenotyping department a series of standardized functional analysis of mouse models that can be performed in a comprehensive pipeline or on demand, as well as for more specialized studies, that cover the major functions and key physiological systems.

We have developed a pipeline for taxonomic and functional analysis of metagenomic samples and we also archive your raw sequence data in the SRA on your behalf.

GTEx samples were processed through the Integrative Pipeline for Splicing Analyses (IPSA) pipeline with default settings52.

The pipeline that will be used within INFRAFRONTIER - I3 uses a cohort of seven female and seven male mice for a comprehensive first line phenotyping analysis.

The analysis pipeline group has a position open for a software engineer in data management & compression.

NGI provides support and access to the latest technologies for massively parallel DNA sequencing as well as standardized analysis pipelines.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or laptop (MetaPORE).

During the course of the EUMODIC project the pipeline for phenotyping, SOPs and data analyses were continuously optimized to use the fewest number of animals possible.

Genome sequencing of the TRAC clinical samples has now been completed, generating terabytes of data that were processed by the sequence - analysis pipeline team led by Jim Stalker, to produce quality - controlled information about many thousands of variants for each sample.

We have in - house computational pipelines built for metagenomic viral discovery, RNASeq quantification, exome sequencing and whole genome sequencing for variants detection using GATK, Affymetrix & Illumina expression array and SNP chips, GWAS, digital PCR analysis, mass spectrometry and biomarker discovery.

S. Stringer prepared the UK Biobank data for analyses and wrote a pipeline to facilitate efficient data processing.

To that end, practical exercises are performed on real data, and JCVI frequently shares virtual machine images and instructions for setting up the same data analysis pipelines and tools that were employed during training sessions.

In this project, I applied NASP for single nucleotide polymorphism (SNP) identification and characterization, and used FigTree and PHYLOBar for phylogenetic analysis and visualization.The NASP method differs from other published SNP pipelines in terms of supported short - read aligners and SNP callers, the ability to call both monomorphic and polymorphic sites, and the ability to integrate the results from multiple SNP callers and identify the consensus set of SNPs that define the population structure.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or la

Topics that will be explored include: • Cellular and developmental origins of pediatric cancer • Key findings of pan-cancer analysis efforts • Computational pipelines to analyze large - scale sequencing data • Opportunities for leveraging existing cancer genomics datasets • Strategies for integrative analysis of germline and somatic variants • Correlation of germline / somatic variation to clinical features such as tumor subtype.

Using this data set, the team has refined the data processing pipelines that will be used to calibrate the data, and also tested many of the analysis tools that will be used to make images and search for signatures of strong gravity effects at the event horizons of supermassive black holes.

4) One thought though — for my analysis, I placed the value of pipeline assets at ~ $ 250m (typical value for an oncology phIII product).

[link] «Our analysis reveals that compared to pipelines, rail incident rates are higher while the opposite holds for spill rates.»

The measures were aimed at opposing renewable energy standards, pushing through the Keystone XL pipeline project, and barring oversight on fracking, according to an analysis by the Centre for Media and Democracy.

The topics on which we believe additional information and analysis are necessary include the purpose and need for the project, potential greenhouse gas emissions associated with the project, air pollutant emissions at the receiving refineries, pipeline safety / spill response, potential impacts to environmental justice communities, wetlands and migratory birds.

An analysis of the ACP's climate change impact and that of the Mountain Valley Pipeline, conducted for the Sierra Club by physicist Richard Ball, showed that building these two pipelines would result in the emissions of twice the climate pollution of Virginia's entire current greenhouse gas footprint.

The full - time lobbyists out to block pipelines like Keystone XL are abusing the scientific data, Coane explains, by throwing around the emissions statistics for oil sands production and refining, without taking into account the more meaningful well - to - wheels analysis:

Within the next week or so, Casey - Lefkowitz told SolveClimate News in an interview, a coalition of advocates will be preparing an in - depth analysis of the 320 - page draft supplemental environmental impact statement for the proposed 1,702 - mile Keystone XL tar sands pipeline.

It is clear that this pipeline is unnecessary for our energy supply, as the EC's own analysis shows decreasing demand projections for gas across the region.

electric power plants are: (1) survey and assess the capacity, cost, and location of potential depleted gas and oil wells that are suitable CO -LCB- sub 2 -RCB- repositories (with the cooperation of the oil and gas industry); (2) conduct research on the feasibility of ocean disposal, with objectives of determining the cost, residence time, and environmental effects for different methods of CO -LCB- sub 2 -RCB- injection; (3) perform an in - depth survey of knowledge concerning the feasibility of using deep, confined aquifers for disposal and, if feasible, identify potential disposal locations (with the cooperation of the oil and gas industry); (4) evaluate, on a common basis, system and design alternatives for integration of CO -LCB- sub 2 -RCB- capture systems with emerging and advanced technologies for power generation; and prepare a conceptual design, an analysis of barrier issues, and a preliminary cost estimate for pipeline networks necessary to transport a significant portion of the CO -LCB- sub 2 -RCB- to potentially feasible disposal locations.

The research needs that have high priority in establishing the technical, environmental, and economic feasibility of large - scale capture and disposal of CO -LCB- sub 2 -RCB- from electric power plants are: (1) survey and assess the capacity, cost, and location of potential depleted gas and oil wells that are suitable CO -LCB- sub 2 -RCB- repositories (with the cooperation of the oil and gas industry); (2) conduct research on the feasibility of ocean disposal, with objectives of determining the cost, residence time, and environmental effects for different methods of CO -LCB- sub 2 -RCB- injection; (3) perform an in - depth survey of knowledge concerning the feasibility of using deep, confined aquifers for disposal and, if feasible, identify potential disposal locations (with the cooperation of the oil and gas industry); (4) evaluate, on a common basis, more» system and design alternatives for integration of CO -LCB- sub 2 -RCB- capture systems with emerging and advanced technologies for power generation; and prepare a conceptual design, an analysis of barrier issues, and a preliminary cost estimate for pipeline networks necessary to transport a significant portion of the CO -LCB- sub 2 -RCB- to potentially feasible disposal locations.

A new report by the Institute for Energy Economics and Financial Analysis (IEEFA) and Oil Change International quantifies for the first time the financial and carbon impact of public opposition to pipelines and other expanded investment in tar sands production.

He has also recently led analysis examining the need for, and the cost of, the Access Northeast (ANE) natural gas pipeline — with a particular focus on how state clean energy policies would impact natural gas demand going forward.

«As it stands, without a full and proper review and analysis of the environmental impact of this pipeline, MDE is failing to uphold its responsibility to all Marylanders,» said David Smedick, Policy Director for the Maryland Chapter of the Sierra Club.

EPA said that the draft environmental analysis needed further work on a range of issues, ranging from the basic need for the pipeline given U.S. clean energy and carbon pollution reduction goals to its potential impacts on greenhouse gas emissions, air pollution, wetlands, migratory birds, public water supplies and minority communities.

In a report released last week, Oil Change International and the Institute for Energy Economics & Financial Analysis demonstrated how the movement against Keystone XL and other tar sands pipelines has contributed to a decline in the profitability of the tar sands industry.

Our use of expert testimony and analysis in depositions and in the courtroom, including this $ 10.65 million recovery for the family of a man killed in a pipeline explosion and this case in which we recovered $ 1.75 million for the family of a woman killed on Interstate 80 often lead to larger verdicts or settlements that firms without our experience and expertise are unable to obtain.

The «population viability analysis» commissioned by Raincoast for the NEB's review showed that if the pipeline were to proceed, the Southern Residents have a 50 - 50 chance of becoming effectively extinct this century.