Sentences with phrase «annotated genes»

Ensembl also integrates manually annotated gene structures from external sources where available.

«Riding» different lines in the DNA Subway, users can predict and annotate genes in up to 100,000 base pairs of DNA (Red Line), and prospect entire plant genomes for specific genes (Yellow Line).

Vega displays only manually annotated gene structures built using transcriptional evidence, which can be examined in the browser.

I work in a team that uses RNA - seq technology to automatically annotate genes and to determine the different ways genes work in different tissues (tissue - specific splice variation).

Green bars represent annotated genes, while blue bars under the green bars are supporting homologies.

We then processed the resulting count files with a custom perl script to merge counts across manually annotated genes that are split across scaffolds («splitgenes» in the GFF file) and add counts from our final transcriptome mapping round.

This is absolutely necessary: just ask any gene hunter to tell you about that huge linkage peak they have in a region without any annotated genes.

Key aims include developing new methods to annotate genes (characterize the parts list for biology) and building new methods that learn biological networks, and eventually dynamic models (put the parts together).

Points are colored by differential expression class, with different shapes for novel and homology - annotated genes.

C, Refseq - annotated genes that were insufficiently silenced in iPSCs relative to hESCs.

To estimate expression levels, we counted the number of uniquely mapped fragments assigned to each annotated gene.

Ad hoc perl scripts were used to further refine the gene models produced for VR and OR genes, deleting those predictions that fuse adjacent receptor genes or that are antisense to the annotated gene.

A system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.