Sentences with phrase «as reference sequences»

(A) Full - length genome sequence of SARSr - CoV Rs4084 was used as query sequence and RsSHC014, Rf4092 and Rs4081 as reference sequences.

The alignment was performed using BLAT41 («− fine − maxGap = 3» for maximum sensitivity) using the known plasmid as the reference sequence.

The distance between Mezmaiskaya and a particular modern human sequence known as the reference sequence (Anderson et al. 1981) was 22, compared to 27 for the first Neandertal.

Not exact matches

However, to render such a comparison valid, the lab had to upgrade the human X reference sequence, which was originally assembled as a mosaic of sequences from the X chromosomes of at least 16 people.

In response, Page and colleagues devised what is known as SHIMS (single - haplotype iterative mapping and sequencing) to establish a definitive reference DNA sequence of the Y chromosome.

«As the first reference sequence of the sunflower genome, it's quite the accomplishment,» said paper co-author John M. Burke, professor of plant biology and member of the UGA Plant Center.

«Humans vary in their DNA sequences, and what is taken as the «normal» DNA sequence for reference can not account for all these differences,» says Stuart Orkin, MD, of Dana - Farber Boston Children's Cancer and Blood Disorders Center and co-corresponding author on the study with Matthew Canver, an MD - PhD student at Harvard Medical School.

Further exploring data amount, we used the assembled ~ 1.1 - billion - bp chicken genome (40) as a reference to generate a 322 - million - bp MULTIZ alignment of putatively orthologous genome regions across all species, comprising ~ 30 % of an average assembled avian genome and corresponding to the maximal orthologous sequence obtainable across all orders under our homology criteria (SM3).

Reference materials are critical to properly evaluate the next - generation of gene sequencing and genetic testing methods that will increase the reliability and effectiveness of precision medicine (also known as «personalized medicine»), in which a person's genetic profile is used to create treatments and therapies unique to that individual.

This has implications for the use of deep sequencing analysis of immunization studies: if the sequence of J3 had been used as a reference to filter the sequences from llama 9 (without prior screening of VHH from llama 9), no J3 - like antibodies would have been found, 3E3 would not have been identified and it would have falsely appeared that the immunization of llama 9 had failed.

Among the sequenced samples, we randomly chose 96 pregnancies with euploid male fetuses as the reference control set for z score calculation.

References Tabor HK, Auer PL, Jamal SM, Chong JX, Yu JH, Gordon AS, Graubert TA, O'Donnell CJ, Rich SS, Nickerson DA, NHLBI Exome Sequencing Project, & Bamshad MJ (2014).

Pepper concludes, «The overall strategy for genotyping - by - sequencing, marker discovery, and annotation that we have provided in this study will be useful for researchers working with the many economically important allotetraploid species (such as the crop brassicas), but can be extended to any species, including those that do not currently have a reference genome.»

To determine the optimum restriction enzyme combination for preparing the double - digest genotyping by sequencing (ddGBS) library, a digestion simulation was performed according to Wang et al. [19], using the draft genome as a reference (see Supplementary file «Digestion simulation»).

Novel insertions of mobile elements into the sequenced genome are identified as clusters of reads that uniquely map to the reference genome with one arm and to ubiquitous sequence with the other arm.

In the cnvSegmentsDiploidBeta file, a segment labeled as «invariant» indicates that coverage does not support normal ploidy but the abnormal ploidy is observed to be invariant in both the sequenced genome and the 52 samples that represent the reference genomes for CNV analysis.

Genomic and Small RNA Sequencing of Miscanthus x Giganteus Shows the Utility of Sorghum as a Reference Genome Sequence for Andropogoneae Grasses, Kankshita Swaminathan, Magdy Alabady, Kranthi Varala, Emanuele De Paoli, Isaac Ho, Dan Rokhsar, Aru Arumuganathan, Ray Ming, Pamela Green, Blake Meyers, Stephen Moose, Matthew Hudson, Genome Biology, 11 (2), Feb. 3, 2010.

So are most of the study's authors, a fact made plain by the UK epidemiology figures and the reference to Genome England as an example of a large - scale genome sequencing initiative in the Introduction.

As with other model organisms, the fully sequenced zebrafish genome has acted as an invaluable reference tool for scientistAs with other model organisms, the fully sequenced zebrafish genome has acted as an invaluable reference tool for scientistas an invaluable reference tool for scientists.

From the test sequence data, my colleagues and I knew that the specimens were «complex» enough to obtain the full genome, but the only way to put the code together would be by using the genome of the band - tailed pigeon as a reference map.

They then scanned multiple RNA sequences from the sample, and used genetic databases to help them decide which candidate sequence would be best suited for its purpose as a broad Zika reference.

The large number of germline sequences serves as a reference for future studies, and has allowed statistically powerful conclusions to be drawn on the pressures that have shaped these loci.

Whenever the sequencing data did not show any calls at a given position, we assumed the same genotype at this position as for the reference genome.

She emphasized several times the value of TCGA's GBM sequencing as a reference cancer genome, with high - quality mutations already profiled for mutations, gene expression, etc..

As with any MacFarlane effort, where he once again teams with co-writers Alec Sulkin and Wellesley Wild, pop - culture references is the first port of call for joke - central, and the sequel is again over-loaded with them: the Planes, Trains and Automobiles and The Breakfast Club sequences are a hoot, but the Comic Con finale feels flat, more creative auto - pilot than uncharted waters.

Given that Apatow's audiences tend to run on the immature side, it's a safe bet to assume that many of the references will be lost on a sizable portion of the potential ticket buyers, who will probably think the filmmakers are just geniuses at being weird, such as a silly acid trip where Dewey meets The Beatles, including an animated sequence a la Yellow Submarine, that is dead on arrival.

Supported by a Craig Armstrong score that, perhaps intentionally, references the nationalist hymn Jerusalem, sequences such as Snowden smuggling information out of the NSA base where he works become genuinely tense.

The effects team took a research trip with the crew and went whitewater rafting, capturing video footage to use as reference for a big sequence where Arlo gets carried downriver.

«Rango» is a mélange of influences, but it's saying something that Verbinski could reference «Apocalypse Now» (complete with a banjo - plucking rendition of «Ride of the Valkyrie» by Hans Zimmer) and «Deliverance» (or maybe it's «Texas Chainsaw Massacre «-RRB- during a sequence that also features Johnny Depp, as a conflicted chameleon, flying through the air while wearing a dress.

House elves are just as prominent in the U.S. wizarding world as they are in the UK, and I'd imagine if you freeze frame that opening sequence, the newspapers are loaded with more references.

A criterion - referenced test for Mathematics should reflect the scope and sequence of state standards (such as the common core state standards.)

Checks sequencing (such as alphabetical order) and cross-references (for example, references to tables).

The team of competent writers is working continuously in offering high - quality essay work to the student with a proper sequence of reference list and as per the need of a student.

When I heard it described as anime I incorrectly assumed this was in reference to the game's over-the-top style, but the game actually is laid out like television episodes, complete with interludes for non-existent commercial breaks, previews and credit sequences throughout.

These artists make reference to particular places or timeframes that are brought forward (or backward) to the present day, forcing viewers to question traditional notions of time as it exists in a rigid, linear sequence.

The show had two central points of reference: Stanley Kubrick's The Shining (1980), based on the novel by Stephen King, and the Disney adaptation of Uncle Remus by Joel Chandler Harris, which opened in 1946 as Song of the South, a film musical containing both live - action and animated sequences.

Other series, such as «Cathedrals» and «Haystacks», contain particular art - historical references, while the blank «Mirrors» sequence of 1970 — 1972 questions the assumption that representational art should reflect reality.

Davenport uses the colors as a reference point to initiate his own color sequences and explorations of movement, surface and light.

> [W] e have adopted the more neutral term «degree of confirmation» instead of «probability» because the latter is used in science in a definite technical sense involving reference to the relative frequency of the occurence of a given event in a sequence, and it is at least an open question whether the degree of confirmation of a hypothesis can generally be defined as a probability in this statistical sense.

Because the computer with which we conducted the steps for this tutorial (as we personally test and confirm all steps in all articles we write here at How - To Geek) would not cooperate with our capture tool during the time it was booted into Windows PE we recreated the sequence in a virtual machine expressly to create the screenshots for your reference.