Sentences with phrase «at reading the sequence»

Not exact matches

If you want to read more about it, Peter Kafka at Re / code and Farhad Manjoo at the New York Times have both looked at the sequence of events that led to Gigaom's demise.

Watford's away form reads W3 D1 L2 this season and despite having lost their last two road games at Everton and Chelsea, they have maintained their sequence of having scored exactly two goals in each of their away games this season which is pretty remarkable.

Linked RNA - DNA pairs are selectively fished out, then converted into chimeric sequences that can all be read at once using high - throughput sequencing.

I remember looking at the report and realizing that there were all of these similar genes in all of these different animals and thinking: «Maybe a careful reading of the papers associated with the sequences most similar to mine will tell me something about my own gene.»

The new study, led by Johannes Krause, a geneticist at the Max Planck Institute for the Science of Human History in Jena, Germany, used next - generation sequencing methods to read stretches of any DNA present in a sample and fish out those that resembled human DNA.

As an undergraduate studying genome sciences at the National Autonomous University of Mexico, she was immediately fascinated when she read some of the early papers about sequencing Neandertal mitochondrial DNA.

Competitors have to be good at everything — braille, cryptography, Java, origami, base 16, flag signals, integer sequences, tarot cards, map reading, and Mandarin Chinese.

The single - cell technique is better at detecting subtle mosaicism than usual DNA sequencing methods, which sequence many thousands or millions of cells mixed together and read out an average for the sample.

Sequencing nuclear genomes requires sequencing the DNA library many times over, increasing the «depth» of sequence reads at Sequencing nuclear genomes requires sequencing the DNA library many times over, increasing the «depth» of sequence reads at sequencing the DNA library many times over, increasing the «depth» of sequence reads at each base.

The team employed a new, massively parallel technique called pyrosequencing, which uses pulses of light to read the sequence of thousands of bases at once.

In all, two million «reads» spelled out the worm sequence, 500 bases at a time.

Then in the early 1990s, Katherine Cullen and a team at Vanderbilt University developed a method to artificially fuse pieces of DNA that are nearby in the nucleus — a seminal feat that made it possible to analyze the ultrafolded structure of DNA merely by reading the DNA sequence.

Now, Timothy Read at The Institute for Genomic Research (TIGR) in Rockville, Maryland, and colleagues have sequenced the entire Florida strain and compared it to the genome of the so - called Porton strain.

Although many conditions may be simpler to diagnose by reading symptoms, we are rapidly nearing a point at which exome sequencing could be used to spot diseases before their effects are felt, or predict how people might respond to drugs or vaccination.

It hasn't been possible to fully sequence such highly repetitive segments because conventional techniques can only read a few hundred DNA letters at a time, so there has been no way to join these pieces up in the right order.

In a cramped room at Johns Hopkins Medical Center, a machine the size of a refrigerator hums 24/7 to read gene sequences from samples.

The CDR3 sequences of the subsets were then analyzed for the frequencies of residues that matched to those found in the mature CDR3 at the same position and the number of unique reads where sequential CDR3 residues (runs) matched to the mature CDR3 sequence.

Using simulations, we show the method is accurate across a variety of read lengths, with different length reference sequences, at different sample depths, and when samples contain reads originating from organisms absent from the reference.

At some point, scientists might be able to save space by not storing sequences in full, similar to the way data is managed in particle physics, where information is read and filtered while it is generated.

The ChIP DNA was sequenced on an Illumina HiSeq platform and read counts were calculated at consecutive 100 bp bins across the human genome hg19.

New generation of sequencing technology uses nanopores to deliver ultra long read length single molecule sequence data, at competitive accuracy, on scalable electronic GridION platform.

Michael Schatz is a computational biologist and an expert at large - scale computational examination of DNA sequencing data, including the alignment, assembly, and analysis of next - generation sequencing reads.

Motivation: Single Molecule Real - Time (SMRT) sequencing technology and Oxford Nanopore technologies (ONT) produce reads over 10kbp in length, which have enabled high - quality genome assembly at an affordable cost.

A consensus sequence based on mapped deep sequencing reads was generated for each of the prostate cancer XMRV genomes and used to correct errors in the previously published sequences, with the requirement of no ambiguity at each discrepant nucleotide position.

A read was annotated as a resistance gene according to its best BLAST hit (blastx or tblastx) if (1) the hit had an amino acid sequence similarity above a given threshold and (2) if the alignment was at least 25 amino acids.

A read was annotated as an insertion sequence according to the best BLAST hit if (1) the hit had a sequence similarity above 80 % and (2) if the alignment was at least 50 bases.

The Oxford Nanopore MinION Mk1B is a portable 90 g device that sequences DNA directly at 450 bases / second generating sequence reads in excess of 400 kb.

Reads with a significant hit to the qnr PSSM and that aligned with at least 25 amino acids with 90 % sequence similarity to a known qnr gene were annotated as known.

TFs may also employ a direct readout mechanism that involves the reading of the base sequence in the DNA major groove at the binding site.

All short - read sequencing data have been deposited at the European Genome - phenome Archive (EGA, http://www.ebi.ac.uk/ega/), which is hosted by the EBI, under accession number EGAS00001000274.

To address the issue of short sequencing reads, the Experimental Genomics group at SciLifeLab Stockholm, led by associate professor Afshin Ahmadian and his PhD students Erik Borgström and David Redin, has developed a new technique that is capable of analyzing millions of single DNA molecules in parallel, while maintaining information of how the genetic variants within these molecules are linked.

All sequencing reads were compared against the non-redundant protein database (nr) at NCBI GenBank using BLAST 2.2.1833 using the E-value cut - off 10 − 5 (best hit used).

We used Seqprep68 to identify paired sequences overlapping by at least 15 base pairs, and then mapped these reads to the mitochondrial DNA genome RSRS56 using BWA - 0.6 (ref.

This analysis was limited to sequence reads that mapped to the targeted chromosome X and Y SNPs with a mapping quality score of at least 37, where clusters of duplicate reads (as identified by orientation, and start and end position) were represented by the read with the highest sequence quality.

After reading this study about a week ago however, I have experimented with a light - heavy sequence, and at the moment I like this setup very much.

If anyone who hadn't read the books, but only come to the Harry Potter saga through the movies, had looked my way at a certain moment — for a certain death — they would have probably been surprised to see tears [but that wouldn't be the only time], but the next sequence would set them straight.

From a whiz - bang opening sequence where space folds in on itself as combatants hurl magical fire at on another, to the charismatic, ahem, marvel that is Benedict Cumberbatch in the title role, this action film is... Read More»

At a climactic concert at a party, rows of listeners can be seen gliding off in separate directions as if on separate mind journeys, and in a much earlier surreal sequence featuring newsreel war footage in a cafe, the narrator, reading a letter, can be seen rising with his chair like a film director seated on a crane, all the way to the top of the room, where he encounters his own childhood self running a projector — an image that might be traced, like much else, to one of Proust's extended descriptive passageAt a climactic concert at a party, rows of listeners can be seen gliding off in separate directions as if on separate mind journeys, and in a much earlier surreal sequence featuring newsreel war footage in a cafe, the narrator, reading a letter, can be seen rising with his chair like a film director seated on a crane, all the way to the top of the room, where he encounters his own childhood self running a projector — an image that might be traced, like much else, to one of Proust's extended descriptive passageat a party, rows of listeners can be seen gliding off in separate directions as if on separate mind journeys, and in a much earlier surreal sequence featuring newsreel war footage in a cafe, the narrator, reading a letter, can be seen rising with his chair like a film director seated on a crane, all the way to the top of the room, where he encounters his own childhood self running a projector — an image that might be traced, like much else, to one of Proust's extended descriptive passages.

EXTRAS: There's a making - of featurette, alternate line readings / outtakes, a brief look at filming the high speed chase sequence and some silly infomercials.

A short unit of work looking at analysing a sequence from the film Monster House and developing reading analysis skills and then creative writing skills.

Harvard Graduate School of Education will work with the Strategic Education Research Partnership and other partners to complete a program of work designed to a) investigate the predictors of reading comprehension in 4th - 8th grade students, in particular the role of skills at perspective - taking, complex reasoning, and academic language in predicting deep comprehension outcomes, b) track developmental trajectories across the middle grades in perspective - taking, complex reasoning, academic language skill, and deep comprehension, c) develop and evaluate curricular and pedagogical approaches designed to promote deep comprehension in the content areas in 4th - 8th grades, and d) develop and evaluate an intervention program designed for 6th - 8th grade students reading at 3rd - 4th grade level.The HGSE team will take responsibility, in collaboration with colleagues at other institutions, for the following components of the proposed work: Instrument development: Pilot data collection using interviews and candidate assessment items, collaboration with DiscoTest colleagues to develop coding of the pilot data so as to produce well - justified learning sequences for perspective - taking, complex reasoning, academic language skill, and deep comprehension.Curricular development: HGSE investigators Fischer, Selman, Snow, and Uccelli will contribute to the development of a discussion - based curriculum for 4th - 5th graders, and to the expansion of an existing discussion - based curriculum for 6th - 8th graders, with a particular focus on science content (Fischer), social studies content (Selman), and academic language skills (Snow & Uccelli).

For example, Master of Teaching students at Deakin have worked with a stem cell scientist and academic to produce teaching sequences for VCE (Victorian Certificate of Education) Biology including reading materials, activities and assessment rubrics.

Structured Literacy teachers are also diagnostic, evaluating concept mastery both informally in each lesson (through reading observation and written dictation) and formally at the end of each step in the scope and sequence.

«In the process of learning to read, there is a stage where you have to forefront the form because you're not yet automatic at seeing the sequence of letters and turning them into words,» says Professor Catherine Snow, an expert on language and literacy.

Suitable for elementary grades, this resource contains reading passages with real life pictures of all life cycle stages and opportunities to keep students engaged with a turn and talk at the end of each, KWL, an interactive notebook for vocabulary and the stages, reading comprehension, labeling parts of an insect, compare and contrast insects vs. spiders, using a timeline, sequencing, coloring page, and assessment.

The hands - on learning board and 200 full - color activity cards in the LOGiCO system provide hours of independent, self - correcting practice in - Reading Math Science Social Studies Visual Discrimination Benefits of LOGiCO: Offers differentiated practice at three different, color - coded levels of difficulty Promotes learning independence, enthusiasm, and self - confidence Builds skills and conceptual knowledge required for success in school LOGiCO Classroom Package Includes 200 Activity Cards, 6 LOGiCO Learning Boards, Skill Divider Tabs, Scope and Sequence Skills Chart, and Teacher's Notes.

The new developer diary takes a look at some of the fantastic sequences from The Witcher 3: Wild Hunt with comments... Read more

Shadow of the Colossus launches February 6 on PS4, but in the meantime, you can learn how it runs on PS4 Pro, watch the game's opening sequence, read our hands - on impressions, watch an episode of PlayStation Underground recorded at Bluepoint Games, or peruse a series of other SotC videos over at our YouTube channel.

You probably won't care as much as those who truly know these characters, but at least the dialogue sequences are quick to read through.

The subtitles are noticeably easy to read even during action sequences but the white text does get lost at times in brightly colored backdrops.