Sentences with phrase «bioinformatics analysis of»

Data access and analysis tools are being made available for the 3K RGP dataset through the International Rice Informatics Consortium (IRIC), which promotes collaboration in bioinformatics analysis of rice data and provides computational tools to facilitate rice improvement via discovery of new gene - trait associations and accelerated breeding.

A key program of VIOLIN is Vaxign, the first web - based publically available vaccine target design tool based on bioinformatics analysis of genome sequences using the strategy of reverse vaccinology.

As a part of VIOLIN, we have developed Vaxign, the first web - based publically available vaccine target design tool based on bioinformatics analysis of genome sequences using the strategy of reverse vaccinology.

Identification of a human papillomavirus - associated oncogenic miRNA panel in human oropharyngeal squamous cell carcinoma validated by bioinformatics analysis of the Cancer Genome Atlas.

The Jenner will provide RNAseq and / or bioinformatics analysis of pre-existing transcriptomics data for up to 200 samples from vaccine clinical trials.

In their work, Dr. Lessnick and his team used bioinformatics analysis of experimental data in an unbiased genome - wide approach.

Data access and analysis tools are being made available for the 3K RGP dataset through the International Rice Informatics Consortium (IRIC), which promotes collaboration in bioinformatics analysis of rice data and provides computational tools to facilitate rice improvement via discovery of new gene - trait associations and accelerated breeding.

In small cell lung cancer, starting from bioinformatics analyses of large gene expression datasets, we clustered subsets of co-expressed gene modules, derived networks of transcription factors and simulated their dynamics using logic - based mathematical modeling.

Not exact matches

His expertise is in the areas of signal processing, multimedia content analysis, computational intelligence, pattern classification, as well as, applications in bioinformatics and finance.

The Moores Cancer Center's Molecular Tumor Board brought together medical, surgical and radiation therapy oncologists, biostatisticians, radiologists, pathologists, clinical geneticists, basic and translational science researchers, and bioinformatics and pathway analysis specialists to discuss the intricacies of tumor genetics and tailor a personalized treatment plan for patients with advanced cancer or who have exhausted standard therapies.

Eager to sort through the pile of curriculum vitae's on his desk, Rudnicki is particularly looking for molecular geneticists working on different stem cell systems; scientists with genomics bents like proteomics, microarray analysis, and bioinformatics; and a couple of clinician scientists.

Genomic annotations are the focal point of sequencing, bioinformatics analysis, and molecular biology.

Although no functions could be assigned to three of the proteins, bioinformatics analysis suggested that the remainder are involved in a wide range of biological processes, including reproduction, cellular metabolic processes, multicellular organismal growth, developmental processes, growth, locomotion, response to stimuli, localization and biological regulation.

Peer Bork, head of the Comparative Sequence Analysis group at the European Molecular Biology Laboratory (EMBL) in Heidelberg, gives an inside view of biocomputing research at one of Europe's top research institutions and also points out what qualifies young researchers to join the bioinformatics elite.

Apart from science and engineering, bioinformatics is a vital tool in microarray analysis due to the vast amounts of data that are generated from a microarray experiment.

Next, the contents of the normal and stress - exposed exosomes were characterized and compared using various molecular and cellular biologic techniques, proteomics analysis followed by bioinformatics analyses.

Be introduced to the bioinformatics workflow and the importance of accurate NGS data analysis and interpretation

This progress has imposed increasingly high demands on the bioinformatics tools necessary for analysis of the data generated, which has grown exponentially.

«NYGC is thrilled to have this work be our first published example of the explosive power of collaborations between deeply invested biologists like those in the Simon lab including Elana Simon, and thoughtful bioinformatics scientists like Nicolas Robine and NYGC team, who worked together so effectively with the tools of genomic sequencing and analysis to discover this new chimeric protein and cancer target,» says Robert Darnell, head of Rockefeller's Laboratory of Molecular Neuro - Oncology, HHMI investigator, and president and scientific director of NYGC.

The bioinformatics tools comprise a series of scripts for quality control analysis and biological analysis of the resultant sequencing data.

That requires analytical and bioinformatics tools to conduct disease or therapeutic association and pathway analysis that combines various forms of «omics data.

Using this «Ribotag» approach tissue - specific changes under DR have been measured in muscle, fat, gut, heart, neurons, germline and malpighian tubules, showing a highly tissue specific response upon DR.. We are developing mechanistic models of gene expression regulation and conducting comprehensive bioinformatics analyses on UTRs, promoters and the coding sequences of various elements of differentially regulated genes.

To conduct the analysis, Xuting Wang, Ph.D., of NIEHS, co-author and lead bioinformatics scientist on the paper, led a data mining expedition to sieve through many different data sets.

Cross-referencing data and integrating computational tools into the online ViPR resource allows complex analyses to be easily performed by researchers regardless of their bioinformatics training or expertise.

Professor Matt Bellgard has developed expertise in the areas of comparative genomic analysis, computational biology, molecular evolution, bioinformatics, integrated system development and pattern recognition.

The Virus Pathogen Resource (ViPR) is a US NIH / NIAID - funded, freely - available online bioinformatics resource for search, analysis and visualization of data about 14 different families of human pathogenic viruses, including Coronaviridae (SARS, MERS), Flaviviridae (Dengue, Zika, West Nile, Yellow fever, Hepatitis C), Picornaviridae (Polio, Enterovirus D68), Togaviridae (Chikungunya, EEEV, VEEV, Rubella), Arenaviridae (Lassa), Filoviridae (Ebola, Marburg), Herpesviridae (HSV, EBV, CMV), and Poxviridae (Smallpox).

Our bioinformatics team is developing ways to solve the unique data analysis challenges created by high throughput sequencing of environmental samples and biological collections.

Engineered cells are then validated via next - generation sequencing and analysis of the modified genomic loci with custom analytical tools developed by our bioinformatics team.

A mean of 0.3 million (SD 88 000) reads per sample from the 8 - plex sequencing analysis and 2.3 million (SD 474 000) from 2 - plex sequencing matched our bioinformatics criteria for calculation of percentage chromosome 21.

While there are very good bioinformatics tools for the analysis, validation and comparison of detailed atomic structures, at present there are very few tools available to work with low - resolution data (i.e. volume or shape data).

The Intel «Cherry Creek» supercomputer — which ranks among the world's fastest and most powerful supercomputers for its combination of speed, power, and energy efficiency — cut down calculation time on complicated analyses from years to days, advancing fields such as genomics and bioinformatics, medical and climate research, molecular modeling, and data analytics.

Ebba is a Master student from the «X-program» (Engineer program in Molecular Biotechnology) from Uppsala University, and she will work on building efficient bioinformatics pipelines for efficient analyses of large amounts of next - generation sequencing data.

Herein, we describe the Cancer Stem Cells Therapeutic Target Database (CSCTT), the first online database to provide a rich bioinformatics resource for the display, search, and analysis of structure, function, and related annotation for therapeutic targets of cancer stem cells.

Yue Lu, Ph.D., assistant professor of Molecular Carcinogenesis, performed the bioinformatics analysis.

A range of bioinformatics training opportunities are available to HMS researchers, with classes ranging from 2 - hour introductory Python lectures to a 10 - day in - depth NSG data analysis courses.

The bioinformatics team together with an outstanding computing infrastructure (7.6 petabyte of data storage and 3472 cores of computing) places CNAG as a center of excellence in data analysis.

Facility functions include: statistical analyses and computational modeling for all types of high - throughput data; advanced bioinformatics tools for integrative cancer biology; and data management.

It comes with the same bioinformatics data analysis tools that are known from our successful CLC Genomics Workbench, such as mapping of reads to a known reference, de novo assembly, and variant calling.

This paper presents the characterization of the oil palm genome using different gene prediction methods and comparative genomics analysis, identification of FA biosynthesis and disease resistance genes, and the development of an annotation database and bioinformatics tools.

Professor Crandall studies the computational biology, population genetics, and bioinformatics, developing and testing of Big Data methods DNA sequence analysis.

CLC Genomics Server is a software solution for deployment on your central compute cluster or compute server for centralized bioinformatics analysis and sharing of data generated from all High - Throughput Sequencing platforms.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or laptop (MetaPORE).

At the end of its second year, RD - Connect has successfully achieved its objectives for the period and has made significant progress on the development of the central platform for omics data and the associated bioinformatics tools for data analysis, the integration of biobanks and registries, and the ethical framework for data sharing.

Data analysis will be fully supported by moonshot genomic bioinformatics team led by Dr. Jianhua Zhang (713-792-6807) in the form of paid service.

Interactive Biosoftware is involved in the Clinical bioinformatics work package, specifically the development of a DNA Variant Analysis and Prioritisation Suite.

So, with National Science Foundation funding, we developed a set of laboratories illustrating key concepts of gene analysis in plants, including the relationship between phenotype and molecular genotype, genetic modification of plants and detection of transgenes in foods, and linkage and bioinformatics methods for gene mapping.

Our goal is to provide intuitive bioinformatics tools for the visualization, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modeling, systems biology and education.

In addition, the section will entertain submission of work addressing all aspects of post-transcriptional gene silencing, technologies related to microRNA analyses, as well as bioinformatics relevant to microRNA research.

Key to the project are lab and bioinformatics exercises that will give students the unique opportunity to work with Cold Spring Harbor Laboratory researcher David Jackson in determining the cellular analysis of Arabidopsis genes of unknown function.

His primary research interests are bioinformatics, computational biology, machine learning, and integrative analysis of high throughput sequencing data with an emphasis on regulatory genomics and epigenomics.