Sentences with phrase «by metagenomic sequencing»

Complete assembly of a dengue virus type 3 genome from a recent genotype III clade by metagenomic sequencing of serum

Not exact matches

The samples were analyzed by liquid chromatography - mass spectrometry (LC - MS) to characterize the metabolite composition («metabolomics»), and biocrust DNA was extracted for shotgun sequencing to measure single copy gene markers for the dominant microbe species («metagenomics»).

But researchers report today that they've figured out how to predict the structures of hundreds of unmapped proteins by gleaning insights from one of the strangest of places: «metagenomics» projects that sequence DNA from broad swaths of microbes in the soils and seas.

TFUMseq (Temporal FUnctional Metagenomics sequencing) uses shotgun libraries cloned into a recipient bacterial species, tracked over time in gnotobiotic mice by deep sequencing and computational methods.

Our approach uses metagenomic DNA to construct large ‐ scale heterologous expression libraries that are tracked over time in vivo by deep sequencing and computational methods.

The large volume of sequence data from novel organisms generated by metagenomic projects has triggered the development of specialized databases and tools focused on particular groups of organisms or data types.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or laptop (MetaPORE).

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or la

Unbiased diagnosis of all pathogens in a single test by metagenomic next - generation sequencing is now feasible, but has been limited to date by concerns regarding sensitivity and sample - to - answer turnaround times.

Objectives: The introduction of metagenomic sequencing to diagnostic microbiology has been hampered by slowness, cost and complexity.

Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore - based metagenomic sequencing

Metagenomics is the study of the sequences of large populations of different organisms all growing in a common environment - as for example seawater, soil, the human gut - and these studies are made vastly easier by next - generation sequencing.