Sentences with word «contig»

View a current list of chromosomes, plasmids and contigs stored in this database.

We sequenced a well - known bacterium, Acinetobacter baylyi ADP1 and applied our method to obtain a highly contiguous (one single contig) and accurate genome assembly even in repetitive regions, in contrast to an Illumina - only assembly.

If your Web browser supports Java 1.1, you can browse the Adh annotations in our graphical annotated contig viewer, Ribbon.

Invariant regions may result from some regions of the reference being wrong (such as missed contig overlaps) or rare.

It's an interesting approach, but here's the problem: after assembly, in their proof - of - principle experiment, they achieved a median contig size of 350 bp.

His talk covered three very different applications of next - generation sequencing: high - throughput mutational studies of core promoters, sub-assembly of Illumina reads to 454 - length contigs, and exome capture to unravel Mendelian disorders.

We have assembled de novo the Escherichia coli K - 12 MG1655 chromosome in a single 4.6 - Mb contig using only nanopore data.

However, most genomes contain repeated DNA elements that are longer than the read lengths achievable with typical sequencers, so the genomic order of several generated contigs can not be easily resolved.

Genome assemblies obtained from short read sequencing technologies are often fragmented into many contigs because of the abundance of repetitive sequences.

Helped implement many enhancement requests pertaining to OS and proprietary software needs on the Store System network (i.e. contig, exe on the XPe systems for defragging on a weekly basis)

A chromosome - specific BAC library was used to assemble 82 % of the chromosome into 1036 contigs that were anchored with 1443 molecular markers, providing a major resource for genetic and genomic studies.

These fragments will account for about 90 per cent of the genome and will fall into 500 continuous stretches, or «contigs», separated by breaks.

CEPH will distribute its contigs to any interested researchers who wish to take the map further and improve its resolution.

Immunoprecipitation with antibodies against dimethyl - K4 H3 was limited to the edges of the contig flanking the dimethyl - K9 H3 region [6].

Primer pairs were designed that would amplify sequences scattered along the length of the centromere 8 contig, and these were used to sample the immunoprecipitated DNA using a process called ChIP - PCR, showing that the CenH3 - containing region is approximately 750 kb and does not include the small 2.8 kb cluster of CentO that is separated from the three main arrays.

De novo assembly of > 1 kb regions in the absence of a reference genome produced contiguous sequences (contigs) that aligned with highest similarity to XMRV genomes and not to related MLVs (data not shown).