Sentences with phrase «draft genomes»

To do so, they have used new sequencing techniques and developed innovative procedures to generate a high - quality draft genome on a limited budget.

In collaboration with a group of international colleagues, BTI researchers created a high - quality draft genome sequence of the whitefly and identified genes that code for proteins.

That's easy: A team of scientists from the United States and France has produced a high - quality draft genome of Coffea canephora.

Oryza coarctata plants, collected from Sundarban delta of West Bengal, India, have been used in the present study to generate draft genome sequences, employing the hybrid genome assembly with Illumina reads and third generation Oxford Nanopore sequencing technology.

Coverage expanded to include proteins from draft genomes.

Short Research Paper Draft genome sequence of a biosurfactant producing, Bacillus aquimaris strain SAMM MCC 3014 isolated from Indian Arabian coastline sea water Samadhan Waghmode, Laxmikant Dama, Tejashri Hingamire, Nidhi Bharti, Swapnil Doijad, Mangesh Suryavanshi J. Genomics 2017; 5: 124 - 127.

Eighteen months later, about 50 biologists and bioinformaticists pored over the newly assembled draft genome.

Draft genome assembly (high coverage) and transcriptome sequencing of 14 FBT genomes that infect various body sites

Frequency distribution of 17 - mer sequencing reads in the Argopecten irradians draft genome, as a function of sequencing depth.

Short Research Paper Permanent Draft Genome sequence for Frankia sp. strain CcI49, a Nitrogen - Fixing Bacterium Isolated from Casuarina cunninghamiana that Infects Elaeagnaceae Samira Mansour, Erik Swanson, Zakkary McNutt, Céline Pesce, Kelsey Harrington, Feseha Abebe - Alele, Stephen Simpson, Krystalynne Morris, W. Kelley Thomas, Louis S. Tisa J. Genomics 2017; 5: 119 - 123.

First de novo draft genome sequence of Oryza coarctata, the only halophytic species in the genus Oryza

Pseudomonas baetica strain a390T is the type strain of this recently described species and here we present its high - contiguity draft genome.

He likened the new draft genomes to the publication of the periodic table of the elements.

First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (formerly Scedosporium prolificans)

The technology allows scientists to go beyond fragmented draft genomes and generate the most comprehensive and high - quality de novo assemblies.

Using MinION nanopore sequencing to generate a de novo eukaryotic draft genome: preliminary physiological and genomic description of the extremophilic red alga Galdieria sulphuraria strain SAG 107.79

A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant - microbe interactions and legume evolution

Coverage also expanded to include proteins from draft genomes.

Therefore, reducing genome heterozygosity through inbreeding is an effective strategy for acquiring high - quality draft genomes of non-model organisms.

Draft genome assembly and transcriptome sequencing of five Glossina genomes and two comparative genomes; low coverage genome sequencing of ~ 12 field populations.

Enrichment of carotenoid accumulation - associated SNPs in the Argopecten irradians draft genome

Permanent Draft Genome sequence for Frankia sp. strain CcI49, a Nitrogen - Fixing Bacterium Isolated from Casuarina cunninghamiana that Infects Elaeagnaceae Samira Mansour, Erik Swanson, Zakkary McNutt, Céline Pesce, Kelsey Harrington, Feseha Abebe - Alele, Stephen Simpson, Krystalynne Morris, W. Kelley Thomas, Louis S. Tisa Journal of Genomics 2017; 5:119 - 123

Research Paper Draft genome and SNPs associated with carotenoid accumulation in adductor muscles of bay scallop (Argopecten irradians) Xuedi Du, Kai Song, Jinpeng Wang, Rihao Cong, Li Li, Guofan Zhang J. Genomics 2017; 5: 83 - 90.

Short Research Paper High Quality Draft Genomes of the Type Strains Geobacillus thermocatenulatus DSM 730T, G. uzenensis DSM 23175T And Parageobacillus galactosidasius DSM 18751T Winnie Thabisa Ramaloko, Nadine Koen, Shamara Polliack, Habibu Aliyu, Pedro Humberto Lebre, Teresa Mohr, Florian Oswald, Michaela Zwick, Daniel Ray Zeigler, Anke Neumann, Christoph Syldatk, Don Arthur Cowan, Pieter De Maayer J. Genomics 2018; 6: 20 - 23.

High - Quality Draft Genome Sequence of Low - pH - Active Veillonella parvula Strain SHI - 1, Isolated from Human Saliva within an In Vitro Oral Biofilm Model.

The researchers have published their work in a paper titled «Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta» in the journal Insect Biochemistry and Molecular Biology.

Devarenne said that because only portions of the B. braunii genome in this report are «spelled out,» so to speak, it is considered a draft genome, or first attempt at assembling all the pieces.

Now the draft genome of the species, published in the November 2011 Cell, suggests how genetic adaptations allow these lovely insects to survive their long journey.

There they worked with a team led by professors Tianzhen Zhang and Ruiqiang Li to assemble the draft genome.

Interest in the potato genome is primarily agricultural; scientists hope that with the help of the draft genome unveiled in 2009, they can breed potatoes that are, for instance, drought - tolerant or more nutritious.

With the help of the draft genome, Buell is working to find out.

The draft genome is described online October 12 in Nature.

The draft genome is described in the March 2014 issue of the journal Genetics and the journal Genome Biology.

Thanks to the important innovations described in these articles, the draft genome of the loblolly pine is not only the largest ever assembled, its quality is impressive.

We generated a high - quality draft genome of the species Coffea canephora, which displays a conserved chromosomal gene order among asterid angiosperms.

The draft genome turned out to be «of surprisingly better quality than anyone had expected,» says Francis Collins, director of the U.S. National Human Genome Research Institute.

The draft genome sequence was assembled with metagenomic data from a patient with periodontitis.

Yesterday scientitsts announced in a quartet of papers in the journal Science that the draft genome of bread wheat — Triticum aestivum — had been decoded and mapped.

Here we present the draft genome of a distantly related member within the phylum Bacteriodetes, «Candidatus Bacteroides periocalifornicus.»

Draft Genome Sequence of «Candidatus Bacteroides periocalifornicus,» a New Member of the Bacteriodetes Phylum Found within the Oral Microbiome of Periodontitis Patients.

For enrichment analysis, 89 of the 96 catalog tags were successfully mapped to 55 scaffolds of the draft genome, which amounted to a total length of 2.82 Mb, or 2.85 ‰ genome coverage.

For enrichment analysis, both the scaffolds in which the carotenoid - associated SNPs were located and the total of SNPs located in these scaffolds were determined by aligning the catalog tags with the draft genome using GMAP (version 2015-09-29).

The draft genome generated by the present study covered > 70 % of the whole genome and harbored > 87 % of the known gene transcripts, thereby constituting the most informative genome resource currently available for bay scallop.

To determine the optimum restriction enzyme combination for preparing the double - digest genotyping by sequencing (ddGBS) library, a digestion simulation was performed according to Wang et al. [19], using the draft genome as a reference (see Supplementary file «Digestion simulation»).