The simulations were density - functional theory - based molecular
dynamics simulations run on a powerful computing system known as NWIce at EMSL.
Not exact matches
Using a molecular
dynamics code called NAMD, the team
ran simulations of the wild lignin and the genetically modified lignin in a water cube, modeling the presence of the aldehydes by altering the partial charges of the oxygen and hydrogen atoms on the modified lignin's allylic site.
Due to having many calculations for each atom's structure and computationally demanding molecular
dynamics calculations, the team keeps its
simulations relatively small in scale — the team's largest
runs typically have between 200 - 250 atoms in the
simulation.
They
ran independent molecular
dynamics (MD)
simulations for each of those 87 compounds and computed critical information about the flexibility of each compound once in the ERK2 pocket.
Co-lead author Jiawang Hong, a postdoctoral fellow working with Delaire,
ran quantum
dynamics simulations at the OLCF using Eos, a Cray XC30 supercomputer.
The SEMA Hardware - in - the - Loop system is a collaborative effort with dSPACE, Inc., based in Wixom, Mich. and
running with CarSim vehicle
dynamics simulation software from Mechanical
Simulation, Inc., based in Ann Arbor, Mich..
Moreover, when we
run long - term
simulations that go through today, we see some of the same
dynamics we observed several years ago.
Players interact with environments that
run an advanced fluid
dynamics simulation needed to solve puzzles, overcome enemies, and progress through many unique levels.
In Shooter Ultimate, players interact with environments that
run an advanced fluid
dynamics simulation needed to solve puzzles, overcome enemies, and progress through many unique levels.