Sentences with phrase «estimated allele frequencies»

Therefore, we developed THE REAL McCOIL, Turning HEterozygous SNP data into Robust Estimates of ALelle frequency, via Markov chain Monte Carlo, and Complexity Of Infection using Likelihood, to incorporate polygenomic samples and simultaneously estimate allele frequency and COI.

A previous method, COIL, was developed to estimate complexity of infection (COI) from single nucleotide polymorphism (SNP) data, but relies on monogenomic infections to estimate allele frequencies or requires external allele frequency data which may not available.

This variant is also present in a number of Irish Setter dogs with PRA and has an estimated allele frequency of 0.26 in the breed.

Not exact matches

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation.

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation Vieira, F. G., M. Fumagalli, A. Albrechtsen, and R. Nielsen.

Tumor content was estimated at greater than 60 % by histopathologic review of tumor sections (Fig. 1B) and variant allele frequency analysis.

We estimated an average fixation index (FST) value of 0.084 across all polymorphisms and of 0.169 across polymorphisms with a minor allele frequency (MAF) threshold of 10 % (132,199 SNPs).

Because rarecoal explicitly models rare mutations, it estimates separations in mutation clock time rather than genetic drift time, in contrast to methods based on allele frequency changes in common variants20.

The latter estimate is made by adjusting the frequencies of alleles found at each genomic STR locus to the frequency of the same allele in a large population of random breeding village dogs, thus yielding IR - village dog (IRVD).

The relatively high estimates of the frequencies of the unfavourable recessive alleles in each breed, especially for hip dysplasia, suggest that it would be possible to gain considerable genetic progress by selection against a major gene.

Relatively high estimates of the frequencies of unfavourable alleles in each breed suggest that considerable genetic progress would be possible by selection against major genes.

Please note... there is no estimate of the frequency of the false allele at this time, although it is much lower with the recently improved tests.

The estimated relative risk for disorganised attachment among children carrying the 7 - repeat allele was four-fold, with the frequency of the 7 - repeat allele being 67 % in disorganised infants as opposed to 20 % in securely attached infants [95], and with 50 % frequencies in the insecure - avoidant and resistant groups.