Sentences with phrase «expression values obtained»
The overall distribution of expression values obtained from RNAseq data is bimodal.
http://journals.plos.org/ Not exact matches
«Barriers to obtaining gene expression profiling test heightened perceived value.»
For every pair of tissues we obtain the common genes by intersecting genes that in both tissues have correlation value of gene expression with PMI.
For the regression analyses, the matrix of expression values was obtained for the samples of each tissue and then normalized with the normalize.quantiles function from the preprocessCore library43.
To compute the correlation values of gene expression and PMI without the covariates, a procedure similar to the above was used where Pearson correlation is obtained between gene expression and PMI values (Supplementary Fig. 38).
The SpatialDE test fits the \ (\ sigma ^ 2 \) and \ (\ delta \) parameters to each genes observed expression levels, and also compares the likelihood with a model that has no spatial variance (FSV = 0) to obtain a significance level (p - value).
After solving for a and c from these two conditions, we obtain the desired RF expression, RF (ΔTGr) = RFLGM -LCB- exp (− bΔTGr) − 1 -RCB- / -LCB- exp (− bΔTGr, LGM) − 1 -RCB-, [2] where ΔTGr, LGM is chosen to be − 24 °C from Fig. 2C and values for b are taken from the fits of Eq.