Sentences with phrase «for microbiome analysis»

Development of HipMCL was primarily supported by the U.S. Department of Energy's Office of Science via the Exascale Solutions for Microbiome Analysis (ExaBiome) project, which is developing exascale algorithms and software to address current limitations in metagenomics research.

Not exact matches

Using microbiome analysis technology first developed in Los Alamos Lab to combat disease warfare, the company takes the samples and creates RNA and metabolic profiles for each customer.

Overall stool microbiome community composition was characterized using generalized UniFrac analysis.30 Controlling for the effects of feeding method, delivery mode was strongly associated with infant gut microbiome composition (P <.001; Q <.001)(Figure 1A).

ET: «What this data analysis pipeline, moreover, creates is motivation to look for similar forms of gene loss in other types of symbioses, such as that between humans and their gut microbiomes.

Further analysis by Zitvogel and colleagues suggested that certain bacteria in the Bacteroides and Burkholderia genera were responsible for the antitumor effect of the microbiome.

The Human Microbiome Project offers an opportunity to transform our understanding of the relationships between microbes and humans in health and disease,» said Dr. Alan Krensky, the director of the Office of Portfolio Analysis and Strategic Initiatives (OPASI), which oversees the NIH Roadmap for Medical Research.

Of note today: non-exclusive breastfeeding increases the risk of HIV transmission via the alteration of gut microbiome / T - cell activation; Fasting altered the gut microbiome in beneficial ways but only in mice previously fed a high fat diet; An investigation into new species of the honey and bumblebee gut commensal genus Gilliamella; Catfish development shapes gut microbial community structure independent of diet; A metagenomic analysis of the skin microbiome of the frog, Craugastor fitzingeri; The microbiome is altered during the bioremediation of herbicide contaminated soil; The impact of urban density on the soil microbiome; A randomized placebo controlled clinical trial of a microbiota based drug for the prevention of Clostridium difficile Infection; and the virome of the Cuatro Ciénegas Basin of Mexico

Nephele: A cloud platform for simplified, standardized, and reproducible microbiome data analysis — Nick Weber — Bioinformatics — October 2017

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses — Ben Callahan — F1000 Research — November 2016

Our research includes software for aligning and assembling RNA - seq data, whole - genome assembly, and microbiome analysis.

In the future, the researchers hope to expand their analysis, using SDSC's Comet supercomputer, from 10,000 protein families to one million individual genes, each of which codes for a protein which can be expressed in the gut microbiome.

Taking the microbiome into account may be important for accurate phenotype - genotype analysis due to the increasing awareness of the impact the microbes have on different body sites, through the products they produce, their ability to protect against invading organisms, their direct interaction with the cell structures and the extracellular milieu, provoking inflammatory or immune responses, and many other effects.

In some embodiments, as noted above, outputs of the first method 100 can be used to generate diagnostics and / or provide therapeutic measures for an individual based upon an analysis of the individual's microbiome.