Sentences with phrase «for metagenomic analyses»

A portable system for metagenomic analyses using nanopore - based sequencer and laptop computers can realize rapid on - site determination of bacterial compositions

We developed a portable system for metagenomic analyses consisting of nanopore technology - based sequencer, MinION, and laptop computers, and assessed its potential ability to determine bacterial compositions rapidly.

AmphoraVizu: Chart visualization webserver for metagenomics analysis tools AMPHORA2 and AmphoraNet

Not exact matches

The team also carried out a so - called metagenomic analysis, in which the genomes from all organisms in a sample are sequenced collectively; the great majority of genes they found coded for proteins never seen before.

However, this presents a considerable Big Data challenge, requiring advances in statistical methodology and new software for accurate analysis of metagenomics data.

Of note today: non-exclusive breastfeeding increases the risk of HIV transmission via the alteration of gut microbiome / T - cell activation; Fasting altered the gut microbiome in beneficial ways but only in mice previously fed a high fat diet; An investigation into new species of the honey and bumblebee gut commensal genus Gilliamella; Catfish development shapes gut microbial community structure independent of diet; A metagenomic analysis of the skin microbiome of the frog, Craugastor fitzingeri; The microbiome is altered during the bioremediation of herbicide contaminated soil; The impact of urban density on the soil microbiome; A randomized placebo controlled clinical trial of a microbiota based drug for the prevention of Clostridium difficile Infection; and the virome of the Cuatro Ciénegas Basin of Mexico

A metagenomics analysis finds Cas9 in archaea for the first time, along with two previously unknown Cas nucleases from bacteria.

NextGENe software contains analysis modules for SNP / INDEL resequencing and amplicon analysis and Structural Variant Detection; Whole Genome Alignment; Prediction and Rare Disease Discovery; Copy Number Variation (CNV); RNA - Seq and Alternative Splicing; small RNA and ChIP - Seq Expression Analysis; Metagenomics; de novo aanalysis modules for SNP / INDEL resequencing and amplicon analysis and Structural Variant Detection; Whole Genome Alignment; Prediction and Rare Disease Discovery; Copy Number Variation (CNV); RNA - Seq and Alternative Splicing; small RNA and ChIP - Seq Expression Analysis; Metagenomics; de novo aanalysis and Structural Variant Detection; Whole Genome Alignment; Prediction and Rare Disease Discovery; Copy Number Variation (CNV); RNA - Seq and Alternative Splicing; small RNA and ChIP - Seq Expression Analysis; Metagenomics; de novo aAnalysis; Metagenomics; de novo assembly.

Development of HipMCL was primarily supported by the U.S. Department of Energy's Office of Science via the Exascale Solutions for Microbiome Analysis (ExaBiome) project, which is developing exascale algorithms and software to address current limitations in metagenomics research.

Below are the compiled list of tools and links to a few of them, that can be used for primary and secondary analysis of metagenomic sequence data.

We have developed a pipeline for taxonomic and functional analysis of metagenomic samples and we also archive your raw sequence data in the SRA on your behalf.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or laptop (MetaPORE).

We have in - house computational pipelines built for metagenomic viral discovery, RNASeq quantification, exome sequencing and whole genome sequencing for variants detection using GATK, Affymetrix & Illumina expression array and SNP chips, GWAS, digital PCR analysis, mass spectrometry and biomarker discovery.

We report unbiased metagenomic detection of chikungunya virus (CHIKV), Ebola virus (EBOV), and hepatitis C virus (HCV) from four human blood samples by MinION nanopore sequencing coupled to a newly developed, web - based pipeline for real - time bioinformatics analysis on a computational server or la

Advances in high - throughput DNA sequencing and improved methods for in silico analysis of metagenomic data will be necessary to fully characterize these metagenomes and their associated resistomes.