Sentences with phrase «for orthologous»
The team then filtered these reads to enrich for orthologous DNA fragments.
https://phys.org/ Not exact matches
Of 3671 barn owl long terminal repeat TE insertion loci orthologous in all of the bird genomes, 61 were informative for owls among core landbirds and showed two dominant exclusive TE topologies: (i) an owl + Accipitrimorphae topology, as seen in the MP - EST * TENT; and (ii) an owl + Coraciimorphae topology that excludes mousebird, as seen in the UCE tree (Fig. 3G compared to Figs. 3B and 4B).
Co-developed a method for determining orthologous genes in prokaryotes that can differentiate close paralogs using gene neighborhood context.
Co-developed a method for determining mammalian orthologous genes and their intron / exon boundaries using genome and mRNA data.
Pepper explains, «One of the exciting things about this approach is that it employs a widely used, well - supported, off - the - shelf bioinformatics software known as Stacks (written by Julian Catchen at the University of Oregon) as a «filter» to enrich for pairs of fragments that are likely to be alleles of a single, orthologous region, rather than paralogs or homeologs.»
For example, Bsl1 itself was highly increased in bsl1 - 1 mutants (corrected P = 0.003), as was a gene encoding a BR C - 6 oxidase orthologous to brassinosteroid deficient1 (brd1) from maize (Makarevitch et al., 2012) and rice (Hong et al., 2002)(SvBrd1; Sevir.9 G171700).
This is only done for the antibodies corresponding to genes where the mouse and human genes are orthologous.
Using data from the National Center for Integrative Biomedical Informatics (NCIBI)'s MiMI: (Michigan Molecular Interactions) which contains data from IntAct, DIP, BIND and others, we identified conserved and predicted novel protein - protein interactions (interologs or interologues) in human, mouse, fly, worm, and yeast based on interaction of orthologous proteins found in the other organisms.
Orthologous ORFs for Lcn16 and Lcn17 are found in the same orientation in the rat genome, but synteny is disrupted around this location in the primate lineage and there are no orthologues present in primates or the human genome.