Some of the transcripts hail
from noncoding DNA, the researchers report, but those that do match up with the 399 ENCODE genes overlap with each other extensively.
Not exact matches
The researchers detected this SMN long
noncoding RNA, or lnc - RNA (pronounced «link RNA») for short, in human embryonic kidney cells, brain cell samples and neurons derived
from the stem cells of healthy people and those with spinal muscular atrophy type I and II.
The shadow cast has been so deep that a whole universe (or so it seems) of RNA — predominantly of the
noncoding variety — has remained hidden
from view, until recently.
In a series of elaborate experiments researchers
from Harvard Medical School and Brigham and Women's Hospital discovered that mouse poop is chock full of tiny,
noncoding RNAs called microRNAs
from their gastrointestinal (GI) tracts and that these biomolecules appear to shape and regulate the microbiome.
«Molecular defenses spearheaded by small RNAs called piRNAs (my favorite
noncoding RNAs) can keep transposons
from jumping,» Saey says.
Researchers have ignored these
noncoding RNAs until recently for not complying with the central dogma of biology — that a straight line runs
from gene to RNA (transcription) to protein (translation).
One way to control expression, he explains, is through microRNA, small pieces of
noncoding genetic material that control whether a gene's protein is generated
from the DNA blueprints inside cell nuclei.
Spliceosomes, made
from proteins and short,
noncoding RNA fragments, carry out splicing via catalysis, which in biological processes is usually attributed to protein - based enzymes.
To provide a molecular basis for understanding N - CAM function, the complete amino acid sequences of the three major polypeptides of N - CAM and most of the
noncoding sequences of their messenger RNA's were determined
from the analysis of complementary DNA clones and were verified by amino acid sequences of selected CNBr fragments and proteolytic fragments.
They extracted and amplified DNA
from these samples, concentrating on microsatellites, repetitive
noncoding DNA sections that rapidly accumulate genetic changes.
This, in my opinion, is one of the most compelling parts of this study: in vivo functional validation of a single base change in a
noncoding enhancer that's hundreds of thousands of bases away
from the gene it regulates.
Huang Y - F, Gulko B, Siepel A. Fast, scalable prediction of deleterious
noncoding variants
from functional and population genomic data.
Messenger RNAs (mRNAs) that code for proteins and
noncoding RNAs are key components in the transmission of genetic information in all life forms -
from viruses to complex mammalian organisms.
A team of scientists
from Whitehead Institute and other institutions has shown for the first time how two long intergenic
noncoding RNAs (ncRNAs) in brewer's yeast (Saccharomyces cerevisiae) contribute to a location - dependent switch for the yeast FLO11 gene to toggle between active and inactive states.