Just as engineers rearrange capacitors and resistors to create different electric circuits, researchers can arrange gene promoters and repressors — stretches of DNA that control gene activity — to create
gene circuits with different properties.
Not exact matches
But the benefits of this technology for discerning the
circuits of the mind go much deeper, because the virus that carries the photoreceptor
genes can also carry promoter sequences that express their payload only in neurons
with the appropriate molecular address.
James Collins, a professor of biomedical engineering at Boston University who was not associated
with this research, says, «Efforts in synthetic biology to create complex
gene circuits are often hindered by unanticipated or uncharacterized interactions between submodules of the
circuits.
Also, most DIY biologists are interested in building genetic
circuits in bacteria or yeast, and they can generally do this using well - established techniques, such as SLiCE (seamless ligation cloning extract), and
with genes that have been synthesized by commercial suppliers or that can be obtained from the iGEM registry.
Her research team placed the evolutionarily conserved castor (Cas)
gene, which encodes a zinc finger protein, in a genetic
circuit with two other evolutionarily conserved
genes, hedgehog (Hh) and eyes absent (Eya), to determine the fates of specific cell progeny (daughters).
«For our new systemic viral vectors — AAV PHP.S and AAV PHP.eB — there are many potential uses, from mapping
circuits in the periphery and fast screening of
gene regulatory elements to genome editing
with powerful tools such as CRISPR - Cas9,» says Gradinaru.
Michael Wheeler, left, and Ali Deniz Güler engineered a synthetic
gene that, used in conjunction
with a magnetic field, allows them to control neural
circuits.
Typical models regard
gene circuits as isolated entities that do not interact
with their hosts and focus only on the biochemical processes within the
circuits, noted Lu.
Using bioinformatics tools to identify and map out specific components and regulatory interconnections, the study team found highly dynamic activities during CD8 + T cell responses: a distinct repertoire of super enhancers — groups of enhancers that interact
with promoters to drive
gene transcription, new groups of enhancers that jump into activity only in the memory cell stage, and extensive re-wiring of regulatory
circuits from one cell stage to another.
The
gene - by - hormone interaction's effect on
circuit function was found only
with one of two versions of the
gene that codes for BDNF (brain - derived neurotrophic factor), a chemical messenger operating in the
circuit.
«Estrogen alters memory
circuit function in women
with gene variant: Hormone -
gene interaction may underlie sex / individual differences in mental disorders.»
Zimmer: I was really blown away when I spent the time to understand some of the networks of
genes that E. coli uses to deal
with things like overheating or something, where you have got 10 or 20
genes that are fit together, kind of like the components in [a] the
circuit.
This can be thought of as similar
circuits of components, but
with different wiring, so different
genes are in charge of others.
Synthetic biologists are fitting the genomes of microorganisms
with synthetic
gene circuits to break down polluting plastics, non-invasively diagnose and treat infections in the human gut, and generate chemicals and nutrition on long - haul space flights.
They can ensure that only bacteria
with intact synthetic
gene circuits survive, or confine bacteria to a target environment at 37 °C (body temperature) while inducing them to die at lower temperatures, as demonstrated during bacterial exit from a mouse intestinal tract.
Scott D. Collins, Ph.D., University of Maine, Orono $ 850,000 (2 years) «High - speed Nanopore
Gene Sequencing» Skilled in silicon fabrication methods, this group will try to fabricate a nanopore
with tiny electrodes and built - in
circuits that will be used in experiments that attempt to measure differences in the electron tunneling of individual nucleotides in DNA molecules.
The line displaying the best response, NT4, contains multiple T - DNAs (Table S2)
with segregation of the de-greening
circuit genes (KanR) suggesting linkage.
Response of transgenic tobacco plants
with one copy of each
gene circuit, de-greening
gene circuit and synthetic sensing
gene circuit.
Lines
with one copy of each
gene circuit consistently respond to TNT (Figure S6), though the response is not as strong.
Quantitative RT - PCR analysis of the de-greening
circuit genes (Figure 4E) corroborates the weak response observed in the transgenic plants,
with endogenous NtPOR mRNA levels decreasing to approximately one - third of the control levels, and AtRCCR increasing three-fold.
(E) Plants exposed to TNT vapor were analysed for induction of the de-greening
circuit genes with Real - time qRT - PCR.
«
With the visionary support of the Helmsley Charitable Trust, the research team at the Broad Institute and Massachusetts General Hospital is revealing a comprehensive picture of the
genes and
circuits that cause Crohn's disease.
CS is caused by deleterious mutations in SLC9A6, an X-linked
gene that codes for the endosomal Na + / H + exchanger 6 (NHE6), which is believed to be involved
with circuit development [2, 3].
Feng's group is focusing first on conditions
with the strongest human genetic data, such as Huntington's disease, in which a single
gene causes a disorder, and using advanced neuroimaging technology and other tools to understand how the mutation causes brain
circuits to misfire.
We have previously described a plant response system that produces white plants when a «de-greening
gene circuit» is transcriptionally induced
with an estrogen - like hormone [7].
Space Invaders has also inspired pop culture, even meeting the mobile game
circuit with Space Invaders: Infinity
Gene back in 2010.