The scientists removed
the gene region containing the risk variant from the mouse genome, and found that as a result the mice were healthy but displayed a small decrease in the expression of a nearby cancer gene, called MYC.
Not exact matches
GWAS identify
regions of the genome that can
contain hundreds of
genes potentially affected by a mutation.
While several studies in the intervening years have investigated whether particular
genes were responsible for modifying HD onset, this is the first to employ genome - wide association (GWA) analysis, which scans an individual's whole genome to identify chromosomal
regions containing variants that are associated with the disease traits that are being studied.
In mice, they deleted four ultraconserved elements — individually and in various combinations — that lie within
regions of DNA that also
contain genes important in brain development.
Last summer, Hamer and his colleagues made worldwide headlines when they announced that a
region near the tip of the X chromosome probably
contained a
gene or
genes for homosexuality.
The teams are yet to identify every
gene contained within this supergene
region, but have so far found a
gene involved in colouring, which could explain differences in plumage, as well as
genes involved in processing sex hormones.
Another doubled - up
region contains enhancers that turn on some
genes in the cerebellum, a part of the brain that coordinates movement, speech and performs other important functions.
The locus most strongly associated with severe CCD was found on chromosome 34 — a
region containing three serotonin receptor
genes.
Making up 98 percent of the genome, these
regions do not code for proteins, but they
contain «switches» that like a conductor control when and where
genes are expressed.
In an independent effort, they introduced progressively smaller pieces of DNA from the large
region known to
contain the
gene into embryos of the mutant mice, looking for the smallest piece that would correct the mutation in adult mice and restore a normal rhythm.
And large, genome - wide studies searching for genetic underpinnings for more common diseases, such as lung cancer or autism, have pointed to the nether
regions of the genome between the protein - producing
genes — areas that were often thought to
contain «junk» DNA that was not part of the pantheon of known
genes.
Instead, a chromosomal
region containing genes involved in neuronal development explained most of the male behavioural response.
However, all
regions of the human brain have molecular signatures very similar to those of our primate relatives, yet some
regions contain distinctly human patterns of
gene activity that mark the brain's evolution and may contribute to our cognitive abilities, a new Yale - led study has found.
This will cover a pilot project in a small
region — about 1/1000 of the human genome —
containing the
genes for the major histocompatibility complex (MHC), proteins that present snippets of pathogens to immune cells.
«Capturing introns: Targeting rapidly evolving
regions of the genome for phylogenetics: New protocol for targeting intron -
containing genes to resolve evolutionary relationships between closely related species.»
However, further investigation revealed two candidate genomic
regions that appeared to be involved, one of which
contained the TGBF3
gene.
Using a specialized
gene manipulation technique called chromosome engineering, researchers developed genetically engineered mouse strains in three separate iterations: MYC only, the rest of the
region containing PVT1 but without MYC and the pairing of MYC with the regional
genes.
Bagchi and his team focused on a
region of the genome, 8q24, which
contains the MYC
gene and is commonly expressed in cancer.
And each
region could
contain several relevant
genes.
Consistent with that result, the researchers found that certain
regions of the X chromosome in human female B cells, including
regions that
contain immunity - related
genes, were expressed at higher levels than male cells.
Exploring these sequenced BACs that
contain an estimated two - thirds of all barley
genes, Close and his team found that
gene - rich areas are not found only in high combination
regions.
These
regions can be clumped into larger areas of the genome called quantitative trait loci, which are known to
contain genes that produce a specific physical effect, such as shaggy hair.
The
region may
contain one or several «genetic booster rockets,» as Perls describes them,
genes that slow aging and decrease susceptibility to all age - related diseases.
Several of the genetic
regions contributing to face shape detected by the researchers
contain genes known to play a role in facial development and facial abnormalities.
And because researchers break apart and then reassemble the 3 - billion - letter - long genetic instruction book in order to analyze it, sections that have duplicated
genes are harder to put in the right order and thus harder to study, which was the case with the
region containing the red blood cell protein DNA.
A linkage study identifies only broad
regions containing dozens or even hundreds of
genes, whereas GWA studies often allow the association of a specific
gene with a certain trait in the population.
The fingered
region contains between 100 and 300
genes, and Kaye and colleagues wanted to narrow that down.
Instead, a chromosomal
region containing genes involved in neuronal development explained most of the male behavioral response.
The mfd
gene encodes a protein of 130 kilodaltons and
contains the so - called «helicase motifs,» a leucine zipper motif, and
regions of sequence similarity to UvrB and RecG proteins.
These markers allowed the group to narrow the suspect
region of the chromosome to a 6 - million - base - pair stretch of DNA that turned out to
contain a promising
gene: the - synuclein
gene.
It is important to point out that the
region of the 5qll chromosome
contains various known
genes that play a role in immune response.
Five of these
regions contain no protein - coding
genes and may thus include structural or regulatory elements.
We report genome - wide scans that reveal positive selection in several
regions that
contain genes whose products are likely involved in high - altitude adaptation.
They found that the associated
regions contained numerous candidate
genes, among them
genes known to affect ear function, language development, memory, bird song and the brain's reward mechanism.
We divided the genomic
regions of both
genes to create bins of genomic sequence that
contained all deleterious mutations regardless of category or function.
In a study, published in Science, they investigated a
gene region that
contains a particular single nucleotide variant associated with increased risk for developing colorectal and prostate cancers — and found that removing this
region caused dramatic resistance to tumor formation.
More than 2,000 of the shared
regions identified in this study (out of 3,500) do not
contain genes.
Researchers from the University of Chicago and the Beijing Institute of Genomics estimate that the tumor, about 3.5 centimeters in diameter,
contained more than 100 million distinct mutations within the coding
regions of its
genes — thousands of times more than expected.
The human T cell receptor beta (TRB, previously known as TCRB)
gene locus on chromosome 7 (7q34) includes 65 Vb (variable)
gene segments, followed by two separate clusters of
genes each
containing a Db (diversity)
gene, several Jb (joining)
genes, and a Cb (constant)
region spread over 685 kilobases.
Unfortunately, LOH
regions tend to be kilobases or megabases in size,
containing dozens or hundreds of
genes, and identifying which ones are truly affected in terms of cancer remains challenging.
In addition, the architecture of differentiation is such that these
regions were of small size and
contained very few
genes.
Absence or reduced heterozygosity means that a patient's genome
contains long stretches of homozygosity, which can be problematic if that
region harbors a variant in an autosomal recessive disease
gene.
The modified virus then delivered the new genetic material inside the iPSCs, where the DNA
region containing the broken
gene was replaced with the sequence
containing the normal
gene.
Statistical analyses of functional overrepresentation of
genes that were
contained or partially overlapped differentiated
regions were performed using DAVID 6.7 [75].
Adenovirus
containing a deletion of the early
region 2A
gene allows growth of adeno - associated virus with decreased efficiency
Consistent with the variation in size we also found a heterogeneous number of
genes contained within each
region (ranging from 1 — 31).
However, most differentiated
regions contained very few annotated
genes: 59 segments (57.8 %)
contained three or fewer
genes and 30 (29.4 %) localized to a single
gene.
Given this pattern, genomic
regions that are enriched for fixed differences are likely to be maintained by selection against introgression and thus
contain genes involved in hybrid incompatibilities (or loci experiencing selection at linked sites within subspecies; see below).
She is scanning the genomes of individuals in the current study to identify
regions that may
contain additional
gene candidates.
Most differentiated
regions were smaller than 200 Kb and
contained very few
genes.