We use genetic approaches to identify novel genes and
gene variants affecting the development in humans.
Their goal is a database that will help them examine how specific
gene variants affect health.
However, the real breakthrough is still to be seen, and now researchers at Karolinska Institutet show in two separate scientific papers that many more
gene variants affect how a person responds to medication than previously thought — and thus that today's analytical tools are too coarse.
Not exact matches
The handful of cases that still occur are most likely to
affect non-Jews, families carrying mutations other than the distinctly Ashkenazi
variants of the Tay - Sachs
gene.
The study, which is published in the journal Molecular Psychiatry, describes a possible mechanism for how the
gene variant produces clinical symptoms by
affecting levels of specific proteins in the brain.
We screened a total of 394 Amish research subjects for the KCNH7 mutation; 84 of these individuals carried at least one copy of the
gene variant, and the lifetime incidence of bipolar spectrum disorders among them was 49 percent (41 people were
affected with the disease).
But because the
gene appears to
affect only the cat's color, white tigers are simply genetically healthy
variants of Bengal tigers, which, if bred carefully, might still survive well in the wild.
By comparing the genome of these three
variants, Di - Poï and Milinkovitch have discovered the
gene affected by this mutation.
But the new study has underscored the variability in the copy number
variants and
genes that can be
affected in autistic individuals.
Affected individuals do not have a disease: they only carry 1 copy of a hemoglobin
gene variant, and unlike individuals with 2 copies of the
variant, they do not experience symptoms.
Gene variants that
affect the way our brain works may be the reason, according to a new study.
«These findings suggest that GCLM polymorphisms [
gene variants] that
affect glutathione production also
affect methylmercury retention,» she wrote to me in an e-mail, «and that GSTP1 may play a role in conjugating [chemically joining] methylmercury with glutathione.»
«In all four families there were a total of eight people
affected and now the problem is they all have the same
gene mutated but one
variant,» said Lupski, the corresponding author of the report.
Ishii and his team chose to focus on two histone
variants named TH2A and TH2B, known to be specific to the testes where they bind tightly to DNA and
affect gene expression.
A copy number
variant may
affect dozens of
genes, or it can disrupt or duplicate a single
gene.
They then used the model to predict how autism - linked
variants in the NHE9
gene would
affect the protein's shape and function.
Other medical sequencing projects will use DNA sequencing to: discover new
genes that are involved in common diseases; identify the
genes responsible for dozens of relatively rare, single -
gene (autosomal Mendelian) diseases; sequence all of the
genes on the X chromosome from
affected individuals to identify those involved in sex - linked diseases; and survey the range of
variants in
genes known to contribute to certain common diseases.
A large - scale genomic study uncovered novel genetic
variants and led researchers to an unexpected
gene that
affects bone density and fracture risk.
With the statistical power of 2,000 samples (half in a discovery set, half in a validation set), they were able to search for both cis - regulatory (
variants affecting nearby
genes) and trans - regulatory (
variants affecting distant
genes) relationships.
The
variant found in the present study is an unusual type of mutation that appears to
affect the way the
gene's messenger RNA is processed; the messenger RNA in patients with the mutant TP53
gene appears to lack proper termination and polyadenylation.
MC1R
variants affect the expression of melanocortin and melanogenic
genes and the association between melanocortin
genes and coloration.
The genetic
variant may
affect CHD risk by reducing the expression of the GLUL
gene which is involved in glutamine / glutamic acid metabolism.
Hence, as we gain more detailed knowledge, the pipeline may continuously incorporate new
genes and pathogenic
variants, identified through postnatal WES investigations in severely
affected newborns and children.
An interesting question for the future will be the quest for the potential genetic
variants that may regulate imprinting levels — iQTLs, analogously to eQTLs that
affect gene expression levels.
Nearly all of the
affected children had the HLA - QB * 06:02
gene variant already linked with narcolepsy.
The researchers found that this regular
gene flow mutes genetic
variants unimportant to speciation — allowing them to identify key genetic areas
affected by natural selection.
Their preservation in the zebrafish allows us to visualize in this transparent genetic vertebrate model whether these
variants are just neutral or if they disrupt the regulation of one the neighbor
genes, possibly revealing the actual
gene affected in AMD human patients.
Most of the DNA variations in AMD patients are found outside of the
genes, and it is extremely hard to know whether these
variants are actual mutations and what
genes they
affect.
Compounded by the fact that a single
variant might
affect multiple transcripts /
genes, the number of observed human coding
variants exceeds 22 million.
Although they rely on certain assumptions, such as the ability to define which
variants truly
affect gene function, aggregation tests have another thing going for them.
Researchers at the David Geffen School of Medicine at the University of California, Los Angeles, recently reported in the Journal of Lipid Research that they have identified a
gene variant that
affects FGF19 secretion and thus may
affect bile acid metabolism in both sickness and health.
Furthermore, three of four
affected family members carried a rare
variant in the TSHZ3
gene, also associated with AβPP processing.
An individual may still be a carrier of (or
affected with) a disease if no
variants or only one
variant is found in the relevant
gene.
What's going on in Angela's
genes: People, like the mice in the experiment described above, have
gene variants that
affect how susceptible or resistant they are to addiction.
It is extremely difficult to demonstrate that such
variants are actual mutations
affecting genes, as they could simply be random DNA changes that have a neutral effect.
By analyzing genome sequence data from human populations, including 1269 individuals from sub-Saharan Africa, we identify a diverse array of large copy number
variants affecting the host invasion receptor
genes GYPA and GYPB We find that a nearby association with severe malaria is explained by a complex structural rearrangement involving the loss of GYPB and gain of two GYPB - A hybrid
genes, which encode a serologically distinct blood group antigen known as Dantu.
For instance, a researcher interested in cardiovascular disease could access GTEx data to view all the genetic
variants in the human genome that
affect gene expression in the heart.
Results: Our exome
variant analysis revealed coding
variants in the NLRP7
gene that were present in
affected individuals in two distinct families.
And yet, even after you sequence the exomes of several family members (
affected and unaffected) the causal
variant or
gene remains elusive.
The researchers said their finding could lead to new treatments that might help ease symptoms of menopause, but more research is needed to understand how other rare
gene variants could
affect hot flashes.
Polymorphic
variants of insulin - like growth factor I (IGF - I) receptor and phosphoinositide 3 - kinase
genes affect IGF - I plasma levels and human longevity: cues for an evolutionarily conserved mechanism of life span control.
Some researchers think that low dietary folate levels due to reduced vegetable and fruit intake adversely
affected our
genes giving rise to a genetic
variant, which then impairs our ability to metabolize folic acid.
Methods.: Dogs of various breeds,
affected or unaffected with primary glaucoma, were genotyped for the Gly661Arg
variant of ADAMTS10, as well as 7 other nonsynonymous single nucleotide polymorphisms (SNPs) in other
genes in the beagle POAG locus that segregate with disease.
Concurrently a study in Labrador retrievers has identified a mutant
variant of ATP7B (Chr22) the Wilson disease copper transporter
gene in their
affected dogs while COMMD1 does not appear to be involved in
affected dogs in this and other breeds.