In the new study, researchers calculated genetic scores from over 30 genes for more than 3000 children with no family history of type 1 diabetes but with
gene variants known to convey type 1 diabetes risk and who participated in the TEDDY prospective cohort study.
But what about people who have inherited
gene variants known to increase risk?
In addition to speeding up the development of brain plaques associated with Alzheimer's,
a gene variant known as APOE4 also makes tau tangles — another signature of the disease — worse, researchers report online September 20 in Nature.
Last month, Valent's team reported the first
gene variant known to confer wheat - blast resistance (C. D. Cruz et al..
PEOPLE with
a gene variant known to be linked to aggression may have been born with key brain differences that could make them more likely to snap under pressure.
About a third were carriers of ApoE4,
a gene variant known to increase the risk for heart disease (and Alzheimer's).
Not exact matches
Using a
gene - sequencing technique
known as whole - exome sequencing that targets only the DNA that encodes proteins, the researchers cataloged virtually every significant DNA
variant in three families in which the condition is common.
This process
known as «alternative splicing» and allowing a single
gene to generate multiple protein
variants is especially prevalent in the mammalian brain.
«Now, we
know that epigenetic factors accumulate at a very different pace in each person, depending on the genetic
variants of the lactase
gene.»
In the journal Cell on July 27, researchers show how this DNA
variant enhances the activity of a
gene called endothelin - 1 (EDN1), which is
known to promote vasoconstriction and hardening of the arteries.
Among the DNA
variants known to cause Alzheimer's or increase risk of the disease, none are found in the tau
gene.
Two important
genes known to be close to the chromosome 15
variant region are involved with DNA repair and replication and with intracellular signaling.
However, when specifically asked about a variety of possible incidental findings, only 57 % wanted to
know if they were found to have a
gene variant that would cause an unpreventable and serious illness, and only 47 % wanted to
know about a
gene variant of uncertain significance.
Spalax naturally have a
variant in the p53
gene (a transcription factor and
known tumor suppressor), which is identical to a cancer - related mutation in humans, Band said.
In this research, the group looked at two
variants of miR - 21, a microRNA «oncomiR»
known to target tumor suppressor
genes and which is highly expressed in a number of cancers as well as other proliferative diseases such as psoriasis.
Scientists also
know dozens of
gene variants that increase people's risk of lupus.
These 71 markers were found in the ANK1 and RHBDF2
genes, as well as ABCA7 and BIN1 which harbor
known Alzheimer's disease susceptibility
variants.
«We don't
know if studying the fish will directly help us,» said Rohner, «but evolution has tried a lot of
gene variants over millions of years and I think that's smarter than anything we can come up with, even with machine learning.
The NCP1
gene identified is not a
known variant in humans; it is a rare mutation to the feline population.
Variants in the IQCB1
gene are
known to cause retinal degeneration in humans.
Carrying a particular version of the
gene for apolipoprotein E (APOE) is the major
known genetic risk factor for the sporadic, late - onset form of Alzheimer's disease, but exactly how that
variant confers increased risk has been controversial among researchers.
Three simultaneous reports involving more than 32,000 participants uncovered four new diabetes - associated
gene variants, bringing to 10 the number of
known non-Mendelian genetic risk factors for type 2 diabetes.
The new study focused on 40 cognitively healthy older adults between the ages of 65 and 75 who are carriers of a
gene variant (APOE e4) that is
known to contribute to the risk of developing late - onset Alzheimer's disease.
Next, iCAGES cross-references these
variants to databases of
known cancer - causing
genes, using statistical analyses and machine learning techniques to prioritize the most likely driver
genes.
Gene variants that confer a survival advantage in this way can spread through a population — a process
known as natural selection.
«We
know that most of these risk
variants on their own play little role in the development of MS.. But mapping the collection of
genes associated with MS represents an important advance in efforts to identify the key mechanisms behind its development,» Dr Harbo says.
A decade ago, they also identified a relationship between ALS and excess iron accumulation when they found that 30 percent of ALS patients in their clinic carried a
variant of a
gene known as HFE that is associated with iron overload disease.
Engelhardt's group was responsible for mapping associations between genetic
variants and
gene expression levels on different chromosomes, a connection
known as «trans - expression quantitative trait loci (trans - eQTLS).»
But they found the same
gene variant in the genome of a Denisovan, an extinct species of human
known only from a cave in the Altai mountains in east - central Asia (Nature, DOI: 10.1038 / nature13408).
Many more people, however, carry a low - activity
variant of the
gene,
known as MAOA - L.
Without
knowing which
gene variants were contributing useful properties, people simply selected the best plants for continued cultivation, in this case choosing plants that had large backpacks.
The Neurogenomiks research group, linked to the Achucarro Basque Centre for Neuroscience (EHUgroup) and the University of the Basque Country (UPV / EHU), has just had a research article published in the scientific publication Journal of Immunology; it details how they have managed to show that the
gene known as ANKRD55 produces 3 different transcripts of the messenger RNA, and that the genetic
variant associated with MS greatly increases the production of these transcripts.
While the team doesn't
know the function of those Neandertal
gene variants, it began to search for their influence by examining brain tissue from the prefrontal cortex of 14 adults of European, African, and Asian descent, as well as 14 chimpanzees.
Ishii and his team chose to focus on two histone
variants named TH2A and TH2B,
known to be specific to the testes where they bind tightly to DNA and affect
gene expression.
Other medical sequencing projects will use DNA sequencing to: discover new
genes that are involved in common diseases; identify the
genes responsible for dozens of relatively rare, single -
gene (autosomal Mendelian) diseases; sequence all of the
genes on the X chromosome from affected individuals to identify those involved in sex - linked diseases; and survey the range of
variants in
genes known to contribute to certain common diseases.
The researchers discovered a single letter
variant located in TP53, a
gene known to play a central role in tumor biology and for accumulating so called somatic mutations, during the development of cancer in patients.
To counteract this problem, Spark Therapeutics began to develop a therapy that involved using a
variant of the Factor IX wildtype
gene known as Factor IX - R338L.
In terms of the potential impact of the risk - associated
variants, about half the risk for both disorders appears to be accounted for by
variants already
known to influence the expression of
genes in the brain.
In each case they checked tiny sites of
known DNA - sequence variations — «single nucleotide polymorphisms» — that mark common
gene variants.
The researchers, chiefly from the Broad Institute, Harvard Medical School and Boston Children's Hospital, found that a person's risk of schizophrenia is dramatically increased if they inherit
variants of a
gene important to «synaptic pruning» — the healthy reduction during adolescence of brain cell connections that are
no longer needed.
In addition to these changes, multiple minor, naturally occurring genetic
variants, also
known as polymorphisms, have been described in the p53
gene.
They did their best to filter out
genes known to have random monoallelic expression, single - allele expression due to sequence
variants, or RNA patterns that might look like monoallelic expression due to technical issues with the sequencing.
Closer examination of this
gene variant suggested it may regulate the expression of a neighboring
gene, SLC39A8, which is
known to help protect the airways and lungs from inflammation and cellular damage.
Most of the DNA variations in AMD patients are found outside of the
genes, and it is extremely hard to
know whether these
variants are actual mutations and what
genes they affect.
In a new study, Sklar and her colleagues are scanning 500,000
gene variants,
known as single nucleotide polymorphisms, obtained from a sampling of patients with bipolar disorder.
Phenotypes that result from changes (i.e.,
variants) in a single
gene (i.e., monogenic) and that can be transmitted from parents to offspring in Mendelian patterns, such as autosomal dominant, autosomal recessive, X-linked, are
known as Mendelian phenotypes.
In most cases, the researchers
know only of the association with the identified
gene variants, and not what the
genes might specifically do.
Duke University and other researchers have noted a strong association between development of AMD and presence of a
variant of a
gene known as complement factor H (CFH).
By sequencing the exomes of multiple individuals, isolating what we'd call «tier 1»
variants — Nonsynonymous, nonsense, splice site, or frameshift - indel — and then removing all
known common
variants from public databases, Dr. Shendure and colleagues can reduce 20,000
gene candidates down to a handful.
Importantly, the new process relies on strategically positioning the
gene encoding the capsid
variants on the DNA strand between two short sequences of DNA,
known as lox sites.