By studying Arabidopsis plants for which
the genes for these transcription factors had been selectively knocked out, the group identified a single transcription factor that when inactive resulted in longer roots.
The genes for each transcription factor were made from different bits of DNA that code for the functional parts of proteins, such as a domain that can bind to DNA and another that provides the protein with access to the cell's nucleus.
However, if
the genes for the transcription factors Olig3 or Tlx3 are mutated, the nerve cells in this particular nucleus can not mature properly in the fetus.
Using novel gene - array technology to measure the extent of gene expression in thousands of genes simultaneously, this study shows that as humans diverged from their ape ancestors in the last five million years,
genes for transcription factors — which control the expression of other genes — were four times as likely to have changed their own expression patterns as the genes they regulate.
Not exact matches
The activity of four
transcription factors — proteins that regulate the expression of other
genes — appears to distinguish the small proportion of glioblastoma cells responsible
for the aggressiveness and treatment resistance of the deadly brain tumor.
Transcription factors are responsible for either inhibiting or promoting the expression of genes, and master regulatory transcription factors are like transcription factors on steroids: their actions regulate thousands of genes in different ki
Transcription factors are responsible
for either inhibiting or promoting the expression of
genes, and master regulatory
transcription factors are like transcription factors on steroids: their actions regulate thousands of genes in different ki
transcription factors are like
transcription factors on steroids: their actions regulate thousands of genes in different ki
transcription factors on steroids: their actions regulate thousands of
genes in different kinds of cells.
Affected family members, the group found, had inherited one or two defective copies of ZIC3, a previously unknown
gene that appears to code
for a
transcription factor — a protein that switches other
genes on or off.
A screen
for mouse
genes dependent on dHAND, a
transcription factor implicated in neural crest development, identified Ufd1, which maps to human 22q11 and encodes a protein involved in degradation of ubiquitinated proteins.
In addition, using methods
for the analysis of regulatory networks developed by the Califano lab in the Center
for Computational Biology and Bioinformatics, Department of Systems Biology, the researchers identified a number of
transcription factors (
gene regulators) that have the potential to mimic the environmental signals that trigger papillae to induce new hair growth.
Transcription -
factor genes code
for proteins that regulate the activity of other
genes and so affect an animal's ability to respond to its environment.
Disease processes often begin with mutations in the
transcription factor, or in the DNA they bind to inside the nucleus of cells to regulate the complex interplay of
genes needed
for a healthy functioning body.
In most cases, the
genes responsible
for these processes are known as «
transcription factors» — meaning that they are responsible
for turning other
genes on and off.
All of these
genes code
for transcription factors, which are proteins that control the expression of other
genes.
Thus, this cDNA derives from a
gene (oct - 2) that specifies an octamer binding protein expressed preferentially in B lymphocytes, proving that,
for at least one
gene, a cell - specific
transcription factor exists and its amount is controlled through messenger RNA availability.
These include proteins which control important processes in the cells,
for example the
transcription factors which activate
genes for the production of new proteins.
The resulting papers published in Nature all tell similar stories of shared evolution between species —
for instance, the commonalities of regulatory networks of
genes and the
transcription factors that control their activation.
The
gene codes
for a type of protein called a
transcription factor.
Naturally, every
gene is not regulated by its own distinct
transcription factor; otherwise, a codebook of as many as 30,000
genes would require 30,000
transcription factors — and 30,000 more
genes to code
for them.
When the chimp and human genomes are compared, some of the clearest cases of nucleotide differences are found in
genes coding
for transcription factors.
In addition to looking at
transcription factors, researchers have studied the
genes that code
for the enzymes responsible
for building up the plant's biomass.
MYCN and its kin are «
transcription factors,» proteins that bind to DNA and influence the rate at which genetic information is used by the cell — essentially serving as brightener / dimmer switches
for gene activity.
The activity of each
gene then was analyzed in an attempt to find the specific
transcription factor responsible
for regulating the conversion of sugar to starch in the above - ground portions of the plant, primarily the grains.
Experiments in mice suggested an important role in long - term memory
for CREB, one of many so - called
transcription factors, proteins that switch
genes on and off.
The master regulator
transcription factors and super-enhancers work together to regulate the expression of critical
genes, such as those responsible
for cell identity.
It is expected that the knowledge of the functions of these
transcription factors, when combined with
gene editing techniques, will allow
for the efficient regeneration of blood vessels.
Transcription factors, the tiny proteins that switch
genes on or off in the nucleus of cells, are considered unreachable molecular targets
for drugs attempting to treat medical conditions.
The expression of mRNA
for factors involved in promoting mitochondrial biogenesis, including the
transcription factor Ppard, the PPARδ coactivator Pgc - 1α, and citrate synthase was greater in gastrocnemius muscles from IL - 15Rα — KO relative to B6129 control (Figure 5C); however, levels of these
genes were unchanged in spleen and kidney (data not shown).
Furthermore, GNC and GNL act, at the
gene expression level, in an additive manner with the GOLDEN2 - LIKE1 (GLK1) and GLK2
transcription factor genes, which are also important
for proper chlorophyll accumulation.
In research published this week in the Journal of Neuroscience, University at Buffalo scientists and colleagues focused on a particular protein, called a
transcription factor, that regulates
gene activity necessary
for the development of one type of retinal neuron, the horizontal cells.
Similarly, Bernaudin et al. [43] found increased expression of 18
genes in the neonatal rat brain following hypoxia (8 % O2
for 3 h) including several known hypoxia inducible
genes such as MAP kinase phosphatase - 1 (MKP - 1), several HIF - 1 target
genes including VEGF and GLUT - 1,
genes implicated in apoptosis, signal transduction molecules, and
transcription factors.
In particular, we examined the reprogramming capacity of the proneural
genes neurogenin - 2, Ascl1 and the homeobox
transcription factor Dlx2,
for reasons which become clear in the following.
A group of
transcription factors collectively called the eye field
transcription factors or EFTFs (pax6, rx1, tbx3 [or ET], nr2e1 [or tailless], six3, lhx2, and six6 [or optx2]-RRB- and the neural patterning
gene otx2 are essential
for normal eye formation [6].
In 1984, he moved to the Institute
for Molecular and Cellular Biology, at Osaka University (Osaka, Japan), where his research group continued to study the regulation of interferon
genes and discovered the interferon - regulatory -
factor family of
transcription factors.
A dynamic assembly of diverse
transcription factors integrates activation and cell - type information
for interleukin 2
gene regulation.
Shimon Sakaguchi and colleagues report that the
transcription factor Foxp3 is a key regulatory
gene for the development of regulatory T cells.
The Rel subunit of NF - kappaB - like
transcription factors is a positive and negative regulator of macrophage
gene expression: distinct roles
for Rel in different macrophage populations.
Distinct and essential roles of
transcription factors IRF - 3 and IRF - 7 in response to viruses
for IFN - α / β
gene induction.
Study coauthors Rammohan Rao of the Buck Institute
for Research on Aging and Dale Bredesen of the Buck Institute and UCLA «have provided evidence
for a novel — in fact, radical — idea: that ApoE somehow gains access to the nucleosol and acts as a conventional
transcription factor, influencing the expression of a large number of
genes,» Steven Barger, who studies neurodegenerative disease at the University of Arkansas
for Medical Sciences and was not involved in the study, wrote in an email to The Scientist.
Transcription factors are expressed (or made) at different levels in different cell types, and control what
genes are expressed in every cell, making sure,
for example, that a liver cell remains a liver cell and does not become a neuron.
Hepatocyte nuclear
factor 4α (HNF4α) is a
transcription factor required
for liver development and the control of expression of liver - specific
genes, and it is associated with several critical metabolic pathways [3].
Working with Nancy Cox, PhD, professor of medicine and human genetics and section chief of genetic medicine at the University of Chicago, Bell discovered mutations in the
genes for glucokinase and
for three
transcription factors that cause an early - onset form of diabetes called maturity - onset diabetes of the young.
stem cell therapy
for ischemic cardiovascular disease; Molecular mechanisms of oxygen homeostasis; Genetic syndromes due to mutations in
genes encoding
transcription factors
In the current study, the researchers found that EBNA2 and its related
transcription factors activate some of the human
genes associated with the risk
for lupus and several other autoimmune diseases, including multiple sclerosis, rheumatoid arthritis, inflammatory bowel disease, type 1 diabetes, juvenile idiopathic arthritis and celiac disease.
Our colleagues at Gladstone are using this knowledge to search
for small molecules that can affect
gene regulation and reverse some of the problems caused by the loss of these
transcription factors.»
Other projects focus on studying how mutations found in the
genes for skeletogenic
transcription factors cause skeletal and other defects in human patients and finding ways to overcome the negative effects of these mutations in patients.
The HNF1 beta
gene encodes
for a homeoprotein -
transcription factor that is expressed in the pancreas and the developing kidney.
The group of promoters, whose H3K4me3 levels were affected by combined chidamide and decitabine treatment, but not by either chidamide or decitabine treatment alone, was enriched with binding site motifs
for PU.1, a
transcription factor that activates
gene expression during myeloid and B - cell lymphoid cell development15, 16 (Figure 5C).
«Not only are these
transcription factors vital
for turning on certain
genes, but their interaction is important to keep each other from going to the wrong place and turning on a set of
genes that doesn't belong in a heart cell.»
Overall, this study highlights the close links between
transcription factor - driven genome topology dynamics, chromatin state, and
gene expression and highlights a critical role
for genome topology in enforcing transcriptional programs and cell fate.
Surprisingly, we found that the determinant
for this wing size difference is located in the non-coding region between two known
transcription factors, the master sex determining
gene doublesex and neurogenesis regulator prospero.