Sentences with phrase «genome analysis of»

The genome analysis of the fungus Trichoderma reesei, notorious for the deterioration of fatigues and tents in the South Pacific theater of WWII, highlights... Read more →

Genome Analysis of the Domestic Dog (Korean Jindo) by Massively Parallel Sequencing.

Whole - genome analysis of 297 ST131 E. coli from the 17 cases demonstrated highly related strains from six participants, indicating acquisition from a common source or person - to - person transmission.

The first whole genome analysis of an octopus reveals unique genomic features that likely played a role in the evolution of traits such as large complex nervous systems and adaptive camouflage.

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts.

To better understand the molecular drivers behind resistance, researchers at the Centers for Disease Control and Prevention (CDC) in Atlanta, Georgia, recently conducted a whole - genome analysis of an unusual bacterial strain cultured from a patient in the United States.

Genome analysis of SNP and microsatellite variation among modern European genomes led researchers to propose that the 13,910 * T allele swept through European populations sometime between about 7,000 and 10,000 years ago.

Comprehensive Genome Analysis of Carbapenemase - Producing Enterobacter spp.: New Insights into...

Comprehensive Genome Analysis of Carbapenemase - Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.

Their technique, however, relied on whole genome analysis of methylation that costs upward of $ 1000 per sample.

The first whole - genome analyses of ancient human DNA from Southeast Asia reveal that there were at least three major waves of human migration into the region over the last 50,000 years.

Not exact matches

May 6, 2013 — Take a swab of saliva from your mouth and within minutes your DNA could be ready for analysis and genome sequencing with the help of a new device.

Each individual has thousands of structural variants in their genome, so the researchers narrowed down their analysis to examine just a handful of regulatory regions where genetic variation seemed most likely to cause disruption.

An expanded analysis of colorectal cancer sequences in The Cancer Genome Atlas database showed a high incidence of YME1L1 mutations.

The conclusion comes from analysis of the genetic instruction books, or genomes, of 63 wild - born chimps, two captive chimps named Clint and Donald, and 10 wild - born bonobos.

Their analysis of data in previous studies done by The Cancer Genome Atlas group have shown that the types of abnormal methylation levels they found are lower in smokers who have quit for more than 10 years than those who have not quit.

For Chad Nusbaum, co-director of the Genome Sequencing and Analysis program at the Broad Institute of Harvard University and the Massachusetts Institute of Technology (MIT) in Cambridge, the event was a professional milestone.

Here's hoping that ever - cheaper genome analysis accelerates the use of genetic information.

An analysis of the cat genome led by researchers at Washington University School of Medicine in St. Louis reveals some surprising clues.

The work carried out by Dr Casewell and his co-authors was used in the second paper outlining the analysis of the genome of the Burmese python, also published in the same edition of PNAS.

The analysis revealed that the human genome is organized into large pieces of low or high epigenetic stochasticity, and that these regions correspond to areas of chromosomes that are structurally different in the cell nucleus.

Meta - analyses of genome - wide association studies conducted in these ethnically - diverse populations identified a total of 878 genetic variants belonging to 18 loci associated with asthma risk.

The mouse, dog and human genomes are of high quality whereas the three others are at different stages of analysis completion.»

Now with an extensive and diverse collection of representative apple genomes, thorough and careful analyses have allowed Fei's group to distinguish important genetic markers that will greatly aid breeders in their quest for better apples — be it for disease resistance, shelf - life, taste, or even size.

The pitfalls of statistical analysis In the new investigation, Wörheide and his colleagues reanalyzed the genome data reported in the earlier studies, and their results reject the «Ctenophora first» hypothesis.

Efforts are under way to close the remaining gaps; however, the sequence is of sufficient accuracy and contiguity to be declared substantially complete and to support an initial analysis of genome structure and preliminary gene annotation and interpretation.

An analysis of the HPV16 genome from 5,570 human cell and tissue samples revealed that the virus actually consists of thousands of unique genomes, such that infected women living in the same region often have different HPV16 sequences and variable risks to cancer.

Producing a short list of strong candidates was in itself a feat, accomplished by applying the right filters to analysis of human and chimpanzee genomes, said co-author Gregory Wray, professor of biology and director of the Duke Center for Genomic and Computational Biology.

Now Pääbo and his colleagues have devised a new method of genetic analysis that allowed them to reconstruct the entire Denisovan genome with nearly all of the genome sequenced approximately 30 times over akin to what we can do for modern humans.

However, the results of more recent phylogenetic analyses, derived from comparisons between sequences of specific genes and of whole genomes, seemed to point to Ctenophora as the first group that parted company with the lineage from which the rest of the animal kingdom (including sponges) evolved.

George Church, another Harvard geneticist, is working to speed up the sequencing and analysis of a person's entire genome.

First Farmers (Middle East and Europe 3,000 - 14,000 years ago) Analyses of hundreds of genomes show how early Middle Eastern farmers spread to Europe, mixed with hunter - gatherers and adapted to agricultural diets, including through a lactase gene mutation that allowed people to drink milk after childhood.

«The molecular analysis allowed us to see where the cocktails were inducing changes in the genome, and to link those changes to the treatment failure,» said co-first author CPT Jeffrey Kugelman, Ph.D., of USAMRIID.

A comparative analysis of the genomes ofDrosophila melanogaster, Caenorhabditis elegans, and Saccharomyces cerevisiae — and the proteins they are predicted to encode — was undertaken in the context of cellular, developmental, and evolutionary processes.

The following Berkeley Lab researchers also contributed to the study: Benjamin Bowen, a member of Northen's lab in EGSB and at the Joint Genome Institute, a DOE Office of Science User Facility, helped analyze metabolomics data; Ulas Karaoz in the Earth and Environmental Sciences Area (EESA) analyzed metagenomics data; and Joel Swenson, a former postdoctoral researcher in Biosciences» Biological Systems and Engineering Division, helped conduct correlation and statistical analyses.

Using metabolic function analyses of identified genes, we compared our human genome with the average content of previously sequenced microbial genomes.

Comprehensive genome analysis: more than 85,000 participants from 35 studies Under the direction of the National Institute of Environmental Health Sciences in the United States, the team of international scientists analyzed the data from a total of 85,170 participants from 35 study cohorts.

Using advanced sequencing technologies, University of Oklahoma anthropologists demonstrate that human DNA can be significantly enriched from dental calculus (calcified dental plaque) enabling the reconstruction of whole mitochondrial genomes for maternal ancestry analysis — an alternative to skeletal remains in ancient DNA investigations of human ancestry.

Fully sequenced genomes remain rare, so the bulk of the analysis was done by looking at genetic markers known as single nucleotide polymorphisms or SNPs.

Human DNA can be significantly enriched from dental calculus (calcified dental plaque) enabling the reconstruction of whole mitochondrial genomes for maternal ancestry analysis — an alternative to skeletal remains in ancient DNA investigations of human ancestry.

Leading on from The Genome Analysis Centre's (TGAC) previous announcement of their new bread wheat genome assembly, the landmark resource is now publically available to download at the European Bioinformatics Institute's (EMBL - EBI) Ensembl database for full anaGenome Analysis Centre's (TGAC) previous announcement of their new bread wheat genome assembly, the landmark resource is now publically available to download at the European Bioinformatics Institute's (EMBL - EBI) Ensembl database for full aAnalysis Centre's (TGAC) previous announcement of their new bread wheat genome assembly, the landmark resource is now publically available to download at the European Bioinformatics Institute's (EMBL - EBI) Ensembl database for full anagenome assembly, the landmark resource is now publically available to download at the European Bioinformatics Institute's (EMBL - EBI) Ensembl database for full analysisanalysis.

In - depth analysis of the human body's microflora has been possible only in the past few years — a by - product of the same new gene sequencing techniques that have allowed scientists to cheaply and accurately identify the DNA of the human genome.

«Our finding from statistical analyses of all genes in the genome that SMCHD1 was the only plausible site of causal variants for arhinia — lack of a nose — was frankly shocking, since prior to our study no patients had ever been reported with both conditions.»

These genomic variations have been revealed by studies in the population and by analysis of the genomes of colon cancer patients that are available in data bases such as that of the 1000 Genomes Projecgenomes of colon cancer patients that are available in data bases such as that of the 1000 Genomes ProjecGenomes Project Data.

In an analysis of ancient genomes published August 4 in Current Biology, researchers at Stockholm University and Uppsala University in Sweden and Middle East Technical University in Turkey report that at least two waves of early European settlers belonged to the same gene pool as farmers in Central Turkey — genealogy that can be traced back to some of the first people to cultivate crops outside of Mesopotamia.

«To me, one of the most exciting discoveries to come out of that analysis [of the Neandertal genome] was that there was admixture between modern humans and Neandertals.

Among other initiatives, his group contributes to ENCODE (Encyclopedia of DNA Elements), supported by NIH to define functional genomic elements; the DOE Systems Biology Knowledgebase (KBase) for data sharing and analysis; and the internationally funded 1000 Genomes Project on human genetic variation.

«I needed the genomes and an accurate phylogenetic tree to do the kind of analysis we want to do,» Jarvis says.

Analysis of the 1,042,519 — base pair Chlamydia trachomatis genome revealed unexpected features related to the complex biology of chlamydiae.

«The study analysed the genome of these eight species and performed comparative analysis of animal genes important for signalling, neuronal and ionic conduction, epithelia, immunity and reproduction, which are the basic functions associated to multicellularity,» she adds.