«There's a lot more to
the genome than genes,» says Mark Gerstein, a bioinformatician at Yale University.
Not exact matches
In our tests, the
Gene Knockout Kit gave us greater
than 80 percent knock - out rates for seven targets,» shares Shondra Miller, Ph.D., Director, Center for Advanced
Genome Engineering at St. Jude Children's Research Hospital, on Synthego's web site.
Also found in the water bear
genome were more copies of an anti-oxidant enzyme and a DNA repair
gene than in any other animal.
That gives it more
gene - sequencing capacity, Wince - Smith said,
than all of the
genome centers supported by the U.S. National Institutes of Health combined.
Together, our collective guts have just under 3.3 million bacterial
genes, more
than 150 times as many as reside in our own
genomes.
The
genome encodes ∼ 13,600
genes, somewhat fewer
than the smaller Caenorhabditis elegansgenome, but with comparable functional diversity.
The researchers determined that CRISPR had successfully corrected a
gene that causes blindness, but Kellie Schaefer, a PhD student in the lab of Vinit Mahajan, MD, PhD, associate professor of ophthalmology at Stanford University, and co-author of the study, found that the
genomes of two independent
gene therapy recipients had sustained more
than 1,500 single - nucleotide mutations and more
than 100 larger deletions and insertions.
The results show — for the first time, Briggs thinks — that the bacterial
genomes change with depth: the micro-organisms at 554 metres carry more mutations in
genes that code for energy - related processes like cell division and biosynthesis of amino acids
than are seen in their shallower counterparts.
The nonredundant protein sets of flies and worms are similar in size and are only twice that of yeast, but different
gene families are expanded in each
genome, and the multidomain proteins and signaling pathways of the fly and worm are far more complex
than those of yeast.
The discovery that much of the mammalian
genome is transcribed, in some places without gaps (so - called transcriptional «forests»), shines a bright light on this embarrassing plentitude: an order of magnitude more transcripts
than genes (pp. 1559, 1564, and 1529).
Rather
than supporting a
genome duplication event at the time when yeast evolved to have twice the number of chromosomes, their data indicated that the duplicated
genes had begun to diverge long before.
Reviewing thousands of
genome wide associate studies (GWAS) to identify genetic variants in single nucleotide polymorphisms (SNPs), investigators at Dartmouth's Norris Cotton Cancer Center found that some alleles (one of a pair of
genes located on a specific chromosome) are more frequently risk - associated with disease
than protective.
Now, in a study that looked at the
genomes of more
than 6000 people from Latin America, researchers have identified 18
genes that appear to influence hair traits, including the first ever to be associated with graying.
Mitochondria carry only a few
genes, but they are so plentiful that it's often easier to find their DNA
than the single full human
genome in a cell's nucleus.
(Syn 2.0 was an intermediate stage in this process, the first microbe with a
genome smaller
than that of M. genitalium, which with 525
genes has the fewest of any free - living natural organism.)
«
Gene variants modifying Huntington's symptom onset may lead to new therapeutic strategies:
Genome - wide association analysis identifies sites associated with earlier - or later -
than - expected symptom appearance in human patients.»
This week in Science, researchers led by
genome sequencing pioneer Craig Venter report engineering a bacterium to have the smallest
genome — and the fewest
genes — of any freely living organism, smaller
than the flower's by a factor of 282,000.
Compared with earlier methods to tweak the
genomes of bacteria, plants, laboratory mice and human cells, the Crispr - Cas9
gene - editing method is fast, precise and cheap, an order of magnitude better
than the others.
New
genome - sequencing research suggests white European people with two copies of variant forms of MC1R, a
gene linked to pale skin and red hair, have faces that appear up to two years older
than those who are the same age but don't have both copies.
«It's looking at a much longer trajectory and it's also interrogating the entire
genome rather
than specific subsets of
genes.»
With a diameter in the region of a micrometer and a
genome incorporating more
than 1,100
genes, these giant viruses, which infect amoebas of the Acanthamoeba genus, had already largely encroached on areas previously thought to be the exclusive domain of bacteria.
They found that the Neanderthal
genome shows more similarity with non-African modern humans throughout Europe and Asia
than with African modern humans, suggesting that the
gene flow between us and Neanderthals most likely occurred outside Africa as humans were en route to Europe, Asia, and New Guinea.
It is typically less expensive to get preselected information about the 20,000 or so
genes that make up a person's exome — the section of the
genome that provides instructions for making proteins —
than to perform a more precision - oriented test that targets a single
gene.
The former target, say, using
gene editing techniques to inactivate HIV receptors and achieve resistance of blood cells to the virus (which Sangamo BioSciences is working on in clincial trials) is different
than helping parents who both carry
genes for Huntington's Disease to have a child that is free of the disease (a change to the
genome that would be passed on to future generations and would likely not be very commonly needed).
More
than a hundred sites in the
genome showed strong evidence of recent selection, including
genes that affect muscle tissue, hair, hearing, immune - system function, skin pigmentation, sense of smell, and the body's response to heat stress.
«We have fewer
genes in our
genome than people originally expected because there's this other layer of complexity in the proteome, the collection of proteins expressed by the
genome.
Cheaper, and more efficient,
gene editing technology that allows scientists to manipulate the human
genome with greater ease and precision
than ever before is forcing researchers to consider these questions quickly.
After arriving in their new homes, transferred
genes follow a different evolutionary path
than do
genes that evolve within the same
genome.
For example, they succeeded in inserting a
gene into a predefined position in the
genome (knock - in) in more
than 60 per cent of all manipulated mouse cells.
Biologists have adapted retroviruses to insert beneficial
genes into the
genome, rather
than their own DNA.
Hadfield echoes Besnard's suggestion to amplify and sequence specific
genes rather
than whole
genomes, if that will answer the research question.
In addition, while innovators are trying to lower the cost of whole -
genome sequencing to less
than $ 1,000, it's possible that
gene patents may add to the cost.
The Epigenetics Research group used these cells to perform
genome - wide profiling across more
than 20,000 individual
genes in these patients.
The
genome sequence revealed much more variability
than was expected in the
genes that encode the amylase enzymes.
The three - year study included cell culture studies at Rice as well as a detailed analysis of
gene - expression profiles of more
than 500 patients from the Cancer
Genome Atlas and protein - expression profiles from about 200 MD Anderson patients.
The human
genome, considered as a mass, contains more retrovirus sequences
than actual
genes.
By analyzing genetic samples for over half a million individuals as part of the GIANT research project, which aims to identify
genes that regulate human body and size, researchers found more
than 100 locations across the
genome that play roles in various obesity traits.
al., tested the hypothesis that herbivores — and their plant diets — have evolved to have greater number of Tas2r bitter taste receptor
genes in their
genomes than omnivores or carnivores.
The corn
genome actually has 12,000 more
genes than humans do and manages to stuff them onto 10 chromosomes (as opposed to humans» 23).
The researchers were searching for archaic DNA sequences in those human
genomes at frequencies much higher
than would be expected if those
genes weren't doing people any good.
Its record - setting girth also holds the longest known viral
genome, with DNA that stretches for 1.26 million base pairs, and contains an estimated 1,120 protein - coding
genes, 14 percent more
than Mimivirus's
genome.
But the velvet spider
genome, together with that of the orb weaver and the house spider, has exposed an unexpected variety of silk
genes — «a lot more
than we thought,» Coddington says.
Surprisingly, parts of our
genome are more similar to the gorilla's
than they are to the chimp's, and a few of the same
genes previously thought key to our unique evolution are key to theirs, too.
The human
genome — the sum total of hereditary information in a person — contains a lot more
than the protein - coding
genes teenagers learn about in school, a massive international project has found.
Researchers spent nearly four years trying to identify the location of the Sr35
gene in the wheat
genome, which contains nearly two times more genetic information
than the human
genome.
Cancer — to take a familiar example — is best understood as a disease of the
genome: a breakdown of the usual checks and balances among
genes that keep cells from dividing more
than they should.
When scientists first started mapping human
genomes and comparing them to other organisms, they were shocked to discover humans don't have that many more
genes than flies do.
The number human protein coding
genes, which account for less
than 2 % of the human
genome, have recently been found to number over 20,000.
At first they could not determine more
than six bases in the replica DNA, which did not provide enough unique addresses to identify individual
genes in the human
genome.
Those few studies that have systematically compared individual
gene sequences have shown that
genes and the human
genome may be much more variable
than previously thought.