Sentences with phrase «haplotype analysis»

When Dr. Foley approached me to see if I was interested in the program coordinator position, I was working as postgraduate researcher on a project to identify the origins of the domestic dog through Y chromosome haplotype analysis.

Haplotype analyses showed similar results.

Haplotyping analysis will commence shortly.

Conditional haplotype analyses with the software WHAP revealed that this association is primarily driven by 5 - HTTLPR, rs25532 and rs16965628.

Haplotype analyses were conducted using PHASE software for SNPs from the 1b receptor gene, TPH1 and TPH2.

Not exact matches

Among individuals with two divergent mitochondrial haplotypes (mt - haplotypes), the genome - wide analyses revealed significant differences in nuclear allele frequencies.

«For instance, the benefits of the new UK10K haplotype reference panel are already being realised in analyses of international consortia as well as the 0.5 M people UK BioBank study.»

Genome - wide association analysis comparing affected and unaffected PWC with the SOD1 mutation identified a haplotype within the gene «SP110 nuclear body protein'that was associated with increased risk of developing DM and early age of onset.

Bioinformatic approaches to the analysis of genetic variability and complex genotype - phenotype relationships will moreover include gene sequence and database analyses, measures of association of haplotypes / genotypes with phenotype, clustering procedures, neuronal networks, fuzzy and other techniques in pattern recognition, similarity measures for discrete patterns (e.g., gene sequences, structures, functions), logistic regression methods, and a spectrum of other techniques.

Variations in this marker allowed them to determine which two of the parents» four genes were passed on to children suffering from ADHD, a technique known as haplotype - based haplotype relative risk analysis.

Analysis of a linkage peak on chromosome 13 with a dense set of SNPs (single nucleotide polymorphisms) revealed a four - SNP haplotype spanning the gene encoding FLAP (ALOX5AP) that confers an approximately twofold increased risk of myocardial infarction, or heart attack.

This analysis showed differential expression associated with the haplotypes at both loci, suggesting the risk haplotypes are associated with an effect on T - cell response.

Analysis of an archaic genome sequence indicated that the risk haplotype introgressed into modern humans via admixture with Neanderthals.

Assignment of alleles to haplotypes for nearly all the variants on all chromosomes can be performed by genetic analysis of a nuclear family with three or more children.

Because the polyT repeat is reported as the key variant to define TOMM40 clades A and B, 12 we used this marker and APOE isoform information to perform analyses based on phylogenetic groups as described by Roses et al. 12 Haplotype phase was estimated using PHASE software.22 The phylogeny, which represents the evolutionary relatedness of the haploytpes, was estimated using neighbor - joining with 10 000 bootstrapping replicates in the CLC DNA workbench (CLC bio, Aarhus, Denmark)(Supplemental Figure 3; http://neuroscienceresearch.wustl.edu/Pages/cruchaga2011.aspx).

His group developed sample and data tracking systems, automated sequence - assembly tools for the Human Genome Project and sequence variation analysis methods for the SNP Consortium Project and the International Haplotype Map Project.

The genes were identified through population - and genome - wide linkage scans and association analyses of at - risk haplotypes utilizing genetic and clinical data from the 17,000 participants in deCODE's obesity program in Iceland.

Preliminary sequence analysis of the dog leukocyte antigen (DLA) gene in a heterogeneous population of canine diabetics revealed that one haplotype is overrepresented (84,89).

Our phylogenetic analysis (Fig. 3) revealed that fox haplotypes fell in two well - supported and divergent clades (Clades A & B).

Independent analyses of two of the most widely used mtDNA genes in mammalian phylogeography, cytochrome b and D - loop, recovered only 15 and 20 haplotypes, respectively, instead of the 35 haplotypes recovered by sequencing whole mitogenomes (S2 Table).

Bayesian phylogenetic analysis in BEAST [36] of all unique mainland and island haplotypes (Fig. 3) used the earliest island fox radiocarbon date as a prior estimate for the coalescence of all island fox lineages.

The aligned mitogenomes were visually examined and when a single island individual or an ambiguous base generated a unique haplotype, Sanger sequencing was conducted to verify the basecalls (S1 Text and S4 Table), which did not change except for two samples with conflicting haplotypes that was discarded from all analyses.

Previous analyses using mtDNA RFLP's identified more mtDNA haplotypes than detected by our whole mitogenome (WMG) sequencing analysis on San Miguel (2 RFLP: 1 WMG genotypes) and Santa Catalina (3 RFLP: 2 WMG genotypes), suggesting a possible loss of mtDNA diversity on these islands as a result of population bottlenecks over the past 25 years [15].

Although LeDuc et al. [15] did not consider their sample size to be sufficient for an analysis of geographic structure in the Antarctic blue whale, they were able to report the first estimate of mtDNA diversity in the population and a minimum census of 26 haplotypes among 46 individuals.

Analyses that examine haplotype blocks would begin to elucidate the true causal genetic variants to behavioral phenotypes.

While Dutch researchers have failed to replicate this association [97, 98], parental genetic data and family - based analyses in the Hungarian sample showed a highly significant non-transmission of the 7 - repeat allele (and the -521 T ~ 7 - repeat haplotype) to securely attached infants, as well as a trend for preferential transmission to disorganised infants [95].