Although
the human and chimpanzee genomes are distinguished by 35 million differences in individual DNA «letters,» only about 50,000 of those differences alter the sequences of proteins.
To find out why, David Haussler of the University of California at Santa Cruz compared
the human and chimpanzee genomes.
Producing a short list of strong candidates was in itself a feat, accomplished by applying the right filters to analysis of
human and chimpanzee genomes, said co-author Gregory Wray, professor of biology and director of the Duke Center for Genomic and Computational Biology.
Research comparing
human and chimpanzee genomes, published in Nature, found that there are more than 40 million differences between the two species» base pairs, which are the DNA building blocks.
Not exact matches
It could have been that
chimpanzees and human genomes showed no evidence of having a common ancestor.
By comparing it with that of modern
humans,
chimpanzees and bonobos, plus Neanderthals
and Denisovans, Meyer estimated its age at 400,000 years, twice as old as our own species
and far older than any hominin
genome previously sequenced (Nature, DOI: 10.1038 / nature12788).
Boyd et al. sequenced the
genomes of symbiotic bacteria from
human lice as well as the closely related
chimpanzee, gorilla
and red colobus monkey lice.
This cover story is a look at what information has been coming out of direct genetic comparisons of the
chimpanzee genome and the
human genome.
Intriguingly, the new genetic resistance locus lies within a region of the
genome where
humans and chimpanzees have been known to share particular combinations of DNA variants, known as haplotypes.
Additional support could come from the
chimpanzee genome, which may allow researchers to clock when the genes for slow - twitch muscle fibers — crucial for running long distances
and plentiful in people but not chimps — diverged in the common evolutionary history of
humans and apes.
In a companion paper published this week in
Genome Research, Sudmant
and Eichler wrote that they inadvertently found the first genetic evidence in a
chimpanzee of a disorder resembling Smith - Magenis syndrome, a disabling physical, mental
and behavioral condition in
humans.
When researchers sequenced the
chimpanzee genome in 2005, the biggest difference between it
and the
human genome was the extinct PtERV1 retrovirus, which inserted its DNA into the cells it infected like HIV does today.
Rewiring gene activity in
humans happened, in part, when transposons inserted themselves into the
genomes of
human ancestors after the split from
chimpanzees, he reported last year in
Genome Biology
and Evolution.
When the Max Planck scientists compared the bonobo
genome directly with that of chimps
and humans, however, they found that a small bit of our DNA, about 1.6 %, is shared with only the bonobo, but not
chimpanzees.
After analyzing
human DNA from several populations around the world
and examining primate
genomes dating back to the shared ancestor of both
humans and chimpanzees, researchers reached a striking conclusion that several gene variants linked to schizophrenia were actually positively selected
and remained largely unchanged over time, suggesting that there was some advantage to having them.
Indeed, looking at
genomes of
humans and chimpanzees that had already been sequenced, the researchers found that the primates had more copies of L1 sequences than did
humans.
The team found that ARHGAP11B was also present in Neanderthals
and Denisovans,
human cousins with similarly sized brains, but not in
chimpanzees, with which we share 99 percent of our
genome — further support for the idea that this gene could explain our unusually large
human brains.
Comparing three million letters of the
chimpanzee genetic code with the
human genome draft, Svante Pbo of the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany,
and his colleagues found only a 1.3 percent difference between the two.
Now, the view of the ancient
genome is so clear that Meyer
and his colleagues were able to detect for the first time that Denisovans, like modern
humans, had 23 pairs of chromosomes, rather than 24 pairs, as in
chimpanzees.
The
genomes of
humans and our closest living relatives, the
chimpanzees, differ by just 1.23 percent.
Svante Pääbo Last year Pääbo announced a plan to sequence the entire Neanderthal
genome by 2008
and compare our extinct relative's genes with the genes of
chimpanzees and humans.
Based on the six other published mammalian
genomes (
human,
chimpanzee, mouse, rat, dog
and cow), the sequencers estimated that the feline
genome contained some 20,000 genes.
The effects of these deleterious mutations in
humans and chimpanzees are probably either inconsequential or else they are compensated by adaptive changes elsewhere in the
genome, Keightley says.
I'd like to see a re-doing of all the great ape
genomes, including
chimpanzee and orangutan, to get a comprehensive view of the genetic variants that distinguish
humans from the great apes.
A large number of harmful mutations have accumulated in the
genomes of
humans and chimpanzees, according to a new study.
A scan for positively selected genes in the
genomes of
humans and chimpanzees Nielsen, R., C. Bustamante, A. G. Clark, S. Glanowski et al. 2005.
A scan for positively selected genes in the
genomes of
humans and chimpanzees.
By comparing the
human genome with that of the
chimpanzee, man's closest living relative, researchers have discovered that chunks of similar DNA that have been flipped in orientation
and...
Comparisons of the
human genome and the newly completed draft of the
chimpanzee genome have unearthed major differences between the patterns of large duplicated segments of DNA in the two species...
SPECIES COMPARISON: This circular
genome map shows shared genetic material between
humans (outer ring)
and (from inner ring outwards)
chimpanzee, mouse, rat, dog, chicken,
and zebrafish chromosomes.
Initial sequence of the
chimpanzee genome and comparison with the
human genome.
The
chimpanzee genome differs from the bonobo
genome by about 0.3 percent, which is one - fourth the distance between
humans and chimps.