However, it is important to realise that the majority of DNA losses occurred early after
human and mouse divergence, and at this early time - point hg19 and mm10 DNA loss hotspots show a positive genomic association (Fig 8).
While this is an attractive idea, an analysis of regulatory element evolution shows that lineage - specific regulatory innovation for development occurred prior to
human and mouse divergence [78].
Collectively, these results demonstrate that it is possible to identify locations for the majority of DNA gain and loss events since
human and mouse divergence.
Not exact matches
To better understand the spatio - temporal dynamics of DNA gain
and loss, we dated individual DNA gain or loss events using a series of ingroup species that each mark specific
divergence events between either
human or
mouse (Methods).
Gene expression
divergence levels were obtained from [71]
and were measured in terms of the number of commonly co-expressed genes between
human and mouse one to one orthologs.
After the initial
divergence event between
human and mouse, both genomes underwent their highest rates of DNA loss which continued to slow down throughout their evolution (Fig 8a
and 8b).
This is likely true for two reasons; 1) there would not have been much time for a large number of chromosomal rearrangements to occur between these early ancestral
human and mouse genomes, 2)
and that since
divergence with the boreoeutherian ancestor the
human genome has undergone only a small number of chromosomal rearrangements meaning that many
human telomeric regions are ancestral [58, 73].
To determine whether or not increased DNA gain or loss likely had an evolutionary impact we compared
human and mouse gene expression
divergence.