Wild type alleles
in ancient samples are represented by yellow dots and derived alleles by red dots.
The absence of the extreme AMY2B copy number increase
in these ancient samples indicates that the selective sweep associated with AMY2B expansion must have occurred well after the advent of agriculture and the Neolithic in Europe.
It is likely that these results are due to remnant postmortem damage artificially inflating variation
in the ancient samples and elongating the branch lengths in the G - PhoCS analysis, as we detected an excess of private variants in all three ancient samples compared to European village dogs.
The two major advantages of this estimate are that (a) it only depends on previously discovered variable sites in higher coverage modern dogs (our genotype calling
in ancient samples is likely to be much more accurate in such situations), and (b) it uses only a single chromosome from each population (which can be randomly picked), and thus does not require calling heterozygotes accurately (that is, it should not be sensitive to the lower coverage of our ancient samples).
Fats are a good target, adds George Cody, acting director of the Geophysical Laboratory of the Carnegie Institution for Science in Washington, D.C. — tough, plentiful, and known to survive
in ancient samples from Earth.
She hoped that sequencing and analyzing the DNA
in these ancient samples would offer new information about how polar bears evolved.
Sure enough, the team found methylated DNA
in the ancient sample.
Not exact matches
I think being written only a few decades after these events is about as good a deal as you can get w /
ancient history; same goes for finding early 2nd century
samples of m
in Egypt.
From
Ancient India, through Persia, Babylon, Mesopotamia, Egypt, and the glory of Greece, the descriptions of each civilization's rise and decline are full of pictures and biographies that illuminate the times
in colorful examples and poetic
samplings.
Their work on
ancient DNA from Viking Age horses is more promising: Kool and Boessenkool have collected about 100
samples,
in different states of preservation, from which they hope to build a detailed picture of how equine populations moved and changed.
Researchers analyzed the levels of various trace elements
in hundreds of
samples of carbon - rich shales that had been deposited
in oxygen - poor regions of the ocean surrounding
ancient continents during the past 3.5 billion years.
An olive pit that happened to be cooking
in a tabun (an
ancient oven) at the moment of a violent destruction (such as an earthquake) was the best
sample of all.
And they are looking for new
samples of
ancient material to fill
in details about
ancient events.
With this compelling demonstration of using
ancient soil
samples as proxies for regional climate
in Asia, Caves now plans to extend his investigations elsewhere on the globe.
He and his colleagues had reconstructed the partial genome of a woolly mammoth found frozen
in Siberia, and he was convinced that researchers like himself would soon be able to take bits of degraded tissue
samples, extract
ancient DNA and use them to piece together whole genomes of extinct animals.
The next step will be to gather more
ancient samples from before and after a major environmental change — the end of a glaciation, for example, or the arrival of humans
in the New World — to see whether any epigenetic changes correlate with the environmental transition.
One of the
samples,
in which a tick is hanging onto a dino feather, provides the oldest direct evidence of what these
ancient parasites ate.
A research team led by John Tarduno of the University of Rochester
in New York went to Australia's Jack Hills and collected
ancient samples of rock containing the crystallized mineral zircon.
«It's almost as if we had traveled back
in time and
sampled the same plant that gave rise to cultivated peanuts from the gardens of these
ancient people,» said David Bertioli, an International Peanut Genome Initiative, or IPGI, plant geneticist of the Universidade de Brasília, who is working at UGA.
It's possible, she suggests, that previous studies of
ancient DNA didn't analyze enough
samples to unearth the true amount of genetic diversity
in the region's red deer.
By studying the magnetic orientations
in pristine
samples of
ancient meteorites that formed 4.563 billion years ago, the team determined that the solar nebula lasted around 3 to 4 million years.
«There are lots of people who are interested
in working on these
ancient samples.
On a trip to collect DNA
samples from
ancient horse bones
in Mongolia, Orlando got a whole new perspective on domestication.
(Boxes
in chart represent
ancient cats
sampled in a DNA study.
In some of the e-mail messages, Dr. Mann refers to his assembly of data from a number of different sources, including
ancient tree rings and earth core
samples, as a «trick.»
Among the team's
samples were nine
ancient individuals — six males, two females, and a child of undetermined sex — from the Yamnaya culture north of the Black Sea
in today's Russia.
The mtDNA sequence the researchers claimed to have obtained from the fossil is quite common
in Europe today, making it difficult to rule out the possibility that someone not on the team touched the
sample or the lab equipment used
in the analysis, says evolutionary geneticist and
ancient DNA expert Hendrik Poinar of McMaster University
in Hamilton, Canada.
Beth Shapiro at the University of California, Santa Cruz, gets first dibs on the
samples since her team will take on the most sensitive test, at greatest risk of contamination during handling: the search for
ancient mammoth DNA
in the layers of sediment.
Researchers
in Dublin and York used the latest scientific techniques to extract
ancient DNA and protein from tiny
samples of parchment from documents from the late 17th and late 18th centuries.
In an unusual collaboration, this year the team brought along an
ancient DNA expert to
sample for
ancient pathogens.
The collection includes stone tools and other artifacts, as well as fossilized bones of animals and
ancient hominins, including the Neandertal bones that formed part of the
sample used
in three recent studies of Neandertal DNA.
The concrete
sample examined at the Advanced Light Source by Berkeley researchers, BAI.06.03, is from the harbor of Baiae, one of many
ancient underwater sites
in the region.
Samples of
ancient carbon deposits from this era show a marked increase
in concentrations of carbon - 12 relative to its heavier isotope carbon - 13, indicating a lot of lighter carbon might have been suddenly released at the time.
Analysis of short DNA fragments from a pair of
samples collected
in India and Bhutan matched that of an
ancient polar bear bone.
In addition to collecting DNA from hundreds of modern wolves as well as mutts and purebred dogs, the dual - origin researchers extracted DNA from dozens of ancient dogs, including a particularly high - value sample from a 4,800 - year - old animal unearthed in Newgrange, Irelan
In addition to collecting DNA from hundreds of modern wolves as well as mutts and purebred dogs, the dual - origin researchers extracted DNA from dozens of
ancient dogs, including a particularly high - value
sample from a 4,800 - year - old animal unearthed
in Newgrange, Irelan
in Newgrange, Ireland.
MIXED ANCESTRY Tiny
samples taken from
ancient European skulls,
in a process shown here, yielded enough DNA for researchers to determine that farmers and foragers interbred
in three different regions from 8,000 to nearly 4,000 years ago.
Similarly, all
ancient samples contained a pbf allele that is common
in corn but rare
in teosinte.
New diagnostic techniques revealed traces of blood (inset,
in blue)
in microscopic
samples from
ancient African artifacts such as this one.
To help solve this conundrum, a team led by Richard Aronson of the Dauphin Island Sea Lab
in Alabama decided to
sample ancient staghorn coral rubble that was deposited over the past centuries.
Evolutionary biologist David Lambert of Griffith University
in Australia and his team analyzed DNA
samples taken from
ancient tuatara bones and from living specimens.
He hopes to test
samples of martian soil for
ancient ribosomal RNA gene sequences that are conserved
in all of Earth's known life forms.
It is illegal to remove archaeological
samples from Egypt, so the researchers dated items from museum collections
in Europe and North America, as well as freshly excavated seed
samples from Tell es - Sakan on the Gaza Strip, which was an outpost of
ancient Egypt.
Their prediction is based on a new method of interpreting data from magnetic traces found
in ancient rock
samples.
While visiting France a few years back, geologist John Spray of the University of New Brunswick
in Canada chiseled some rock
samples from the
ancient Rochechouart crater
in west - central France.
The team collected
samples of methane from settings such as lakes, swamps, natural gas reservoirs, the digestive tracts of cows, and deep
ancient groundwater, as well as methane made by microbes
in the lab.
Daniel Bradley and Ceiridwen Edwards, geneticists at Trinity College Dublin, obtained
samples from 23
ancient Irish bear fossils found
in caves
in Ireland as well.
These
samples were analysed
in China and also here at Leicester
in the Starch and Residue Laboratory, School of Archaeology and
Ancient History.
Warming and the seas — both on the rise Those
ancient samples of sediment from 10 coastal wetlands
in North Carolina provide some of the best evidence that sea - level rise closely follows warmer temperatures, Rahmstorf says.
Searches for cancer
in ancient remains are plagued (no pun intended) by
sampling errors — the signature of cancer can be detected
in bones, but many skeletons are incomplete, and of course cancers do not always spread to bone after they originate
in soft tissue.
Samples from this
Ancient Roman pier, Portus Cosanus
in Orbetello, Italy, were studied with X-rays at Berkeley Lab.