Alf Honigmann, Sina Sadeghi, Jan Keller, Stefan W. Hell, Christian Eggeling, Richard Vink A lipid bound actin meshwork organizes liquid phase separation
in model membranes.
Lateral sorting
in model membranes by cholesterol - mediated hydrophobic matching.
Sorting
in model membranes by cholesterol - mediated hydrophobic matching.
Selective inhibition of the Nav1.7 pain channel; Crystal structure of a Nav1.7 - antagonist complex viewed
in a model membrane.
Not exact matches
In the
model, two «sensor» neurons from different points on the basilar
membrane and representing different frequencies send signals to a third «interneuron» that combines the two signals into one.
Here, we present experiments using a reconstituted fusion system that suggest a simple
model in which the complexin accessory helix forms an alternative four - helix bundle with the target - SNARE near the
membrane, preventing the vesicle - SNARE from completing its zippering.
The unusual dimer of the ZIKV protease: inhibitor complex seen
in the crystal may provide a
model for assemblies formed at high local concentrations of protease at the endoplasmatic reticulum
membrane, the site of polyprotein processing.
Interactions of these proteins with the outer
membrane in vivo and
in vitro are well known, allowing for direct comparisons with the synthetic
model.
In the final step in bacterial cell division, constriction of the so - called Z - ring, an annular structure that forms on the plasma membrane near the midpoint of the cell, gives rise to the two daughter cells: A research team led by Erwin Frey, who holds the Chair of Statistical and Biological Physics at LMU, has now used mathematical modelling to understand the mechanism that drives formation of the Z - ring, and in so doing have uncovered a novel class of pattern - forming mechanism in biological system
In the final step
in bacterial cell division, constriction of the so - called Z - ring, an annular structure that forms on the plasma membrane near the midpoint of the cell, gives rise to the two daughter cells: A research team led by Erwin Frey, who holds the Chair of Statistical and Biological Physics at LMU, has now used mathematical modelling to understand the mechanism that drives formation of the Z - ring, and in so doing have uncovered a novel class of pattern - forming mechanism in biological system
in bacterial cell division, constriction of the so - called Z - ring, an annular structure that forms on the plasma
membrane near the midpoint of the cell, gives rise to the two daughter cells: A research team led by Erwin Frey, who holds the Chair of Statistical and Biological Physics at LMU, has now used mathematical
modelling to understand the mechanism that drives formation of the Z - ring, and
in so doing have uncovered a novel class of pattern - forming mechanism in biological system
in so doing have uncovered a novel class of pattern - forming mechanism
in biological system
in biological systems.
«For conventional mathematical
models of this process pattern formation of MinE and MinD on the
membrane can only work if the concentration of MinE is less than that of MinD,» says Jonas Denk, a PhD student
in Frey's team and joint first author of the new paper.
Prof. De Meyts assures that «Prof. Maruyama makes a convincing case that this [dimerization]
model is incorrect, and that
in fact, numerous cell
membrane receptors are pre-dimerized
in the
membrane and are activated allosterically by ligand binding.»
The «rotation
model» Ligand binding to the extracellular part of the receptor induces rotation of the receptor's transmembrane region inside the cell
membrane, and
in doing so, regulates its activity inside the cell.
«Guided by observations that show that the
membrane thickness varies from pole to pole, we constructed a mathematical
model that considers the egg to be a pressurized elastic shell that grows and showed that we can capture the entire range of egg shapes observed
in nature,» said Mahadevan.
To examine the role of soluble antibodies
in the accumulation of MDSCs, they included an additional
model of CLL
in which B cells can only produce
membrane - bound antigen receptors but not soluble antibodies.
Concomitantly, the NpSRII / NpHtrII complex will serve as
model system for development of new site - directed spin labeling EPR methods to elucidate the structure and conformational dynamics of
membrane proteins and protein clusters
in vitro and
in vivo.
Discovery of novel disease - specific and
membrane - associated candidate markers
in a mouse
model of multiple sclerosis.
Our technological expertise ranges from the most fundamental approaches to study
membrane transport
in lymphocytes and dendritic cells (subcellular compartmentalization, intravital microscopy, phagosomal functions), the systematic analysis of gene expression and it regulation (RNAseq, Chip Seq, proteomics) and physiological and pathological immune responses (mouse
models for cancer immunity, immunomodulation / vaccination, human clinical studies
in cancer).
(Invited) Multiscale
Modeling of Transport Phenomena
in Ion - Conducting
Membranes and Aqueous CO2 Reduction Cells A. Z. Weber, A. R. Crothers, M. Singh, C. J. Radke, and A. T. Bell
The computer
models that the winners have developed are of great importance for research
in membrane proteins at Stockholm University and SciLifeLab.
Using whole - cell path clamp, both dSPNs and iSPNs from Q175 6 - month old mice showed elevated
membrane resistance and reduced rheobase current, consistent with previous reports of SPN hyperexcitability
in mouse
models of HD.
Exploring the effects of sterols
in model lipid
membranes using single - molecule orientations.
The Evaluation of a Biphasic Osteochondral Implant Coupled with an Electrospun
Membrane in a Large Animal
Model.
In particular we are interested to unravel the mechanisms that ensure the maintenance of the apical membrane when exposed to physical stress, e. g. during morphogenesis of epithelial tissues, or when exposed to light stress in photoreceptor cells, using Drosophila and zebrafish as model organism
In particular we are interested to unravel the mechanisms that ensure the maintenance of the apical
membrane when exposed to physical stress, e. g. during morphogenesis of epithelial tissues, or when exposed to light stress
in photoreceptor cells, using Drosophila and zebrafish as model organism
in photoreceptor cells, using Drosophila and zebrafish as
model organisms.
This gives a high level of flexibility for the search algorithm as well, because both general (i.e. free rotation and translation) and more specific moves (i.e. adding a new structure element to an existing
model in the
membrane plane) are allowed and biased by probability.
Previous work has given insights into the mechanistic pathways leading to small molecule sequestration
in membrane - free coacervate protocells; successfully demonstrated the use of liquid - liquid phase separated micro compartments for protein expression using cell free expression systems; exploited microfluidics for the high throughput formation of stable, monodisperse microdroplets; and integrated two contrasting modes of protocell construction to produce a novel hybrid
model based on fatty acid
membrane - bound coacervate micro-droplets.
Spectroscopy & Application of Lasers, Zare / Moerner / +, 6 - 1 Nuclear Hormone Signaling, Chambon / Evans / Jensen, 6 - 1 Bioinorganic Chemistry, Gray / Lippard / Holm / — , 8 - 1 The Field (everything not listed), 10 - 1 Techniques
in DNA Synthesis, Caruthers / Hood / +, 10 - 1 Electrochemistry / Electron Transfer, Bard / Hush / Gray / — , 19 - 1 Instrumentation / Techniques
in Genomics, Venter / +, 19 - 1 Biological
Membrane Vesicles, Rothman / Schekman / +, 19 - 1 Molecular Studies of Gene Recognition, Ptashne, 19 - 1 Organic Electronics, Tang / +, 39 - 1 Polymer Science, Matyjaszewski / Langer / + / — 69 - 1 Solar Cells, Grätzel / +, 74 - 1 Mechanistic Enzymology, Walsh / Stubbe / Koshland / + / — , 74 - 1 Combinatorial Chemistry / DOS, Schreiber / +, 99 - 1 Pigments of Life, Battersby / +, 99 - 1 Development of the Birth Control Pill, Djerassi, 99 - 1 Molecular
Modeling and Assorted Applications, Karplus / Houk / Schleyer / Miller / + / — , 99 - 1 Applications of NMR Spectroscopy, Pines / Roberts / McConnell / + / — , 99 - 1 Development of Chemical Biology, Schultz / Schreiber / +, 99 - 1 Self - Assembly, Whitesides / Nuzzo / Stang / — , 149 - 1 Small Regulatory RNA, Ambros / Baulcombe / Ruvkun, 149 - 1 Nanotechnology, Lieber / Whitesides / Alivisatos / Mirkin / Seeman / + / — , 149 - 1 Eukaryotic RNA Polymerases, Roeder, 149 - 1 Contributions to Theoretical Physical Chemistry, Rice / +, 149 - 1 Mechanical Bonds and Applications, Sauvage / Stoddart / +, 149 - 1 Bio - & Organo - catalysis, List / Lerner / Barbas / + / — , 149 - 1 Organic Synthesis, Evans / Danishefsky / Nicolaou / Ley / Trost / Stork / Wender / Kishi / + / — , 199 - 1 Leptin, Coleman / Friedman / Leong, 199 - 1 Fluorocarbons, DuPont / Curran / — , 199 - 1 Understanding of Organic Stereochemistry, Mislow, 199 - 1 Tissue Engineering, Langer / +, 199 - 1 Contributions to Bioorganic Chemistry, Breslow / Eschenmoser / +, 199 - 1 Dendrimers, Frechet / Tomalia / +, 399 - 1 Zeolites, Flanigan, 399 - 1 Molecular Recognition, Dervan / +, 399 - 1 Molecular Machines, Stoddart / Tour / + / — , 399 - 1 Astrochemistry, Oka, 999 - 1
Here the authors, using an ex-vivo
model, show that cancer - associated fibroblasts facilitate colon cancer cells invasion
in a matrix metalloproteinase - independent manner, likely by pulling and stretching the basement
membrane to form gaps.
Dmitry: as the paper itself notes, the most likely mechanism for the ability of hydroxypropyl - β - cyclodextrin to lower Aβ burden
in the mouse
model is AD finding is by normalizing
membrane cholesterol content and reducing the appearance of abnormal cathepsin D - positive lysosomes, leading to reduced beta - secretase cleavage of APP and an upregulation of genes involved
in cholesterol trafficking and Aβ clearance.
Kaphzan, H., Buffington, S.A., Jung, J.I., Rasband, M.N., and Klann, E. (2011) Alterations
in intrinsic
membrane properties and the axon initial segment
in a mouse
model of Angelman syndrome.
In particular, an experimental study on the permeability of prebiotic vesicle
membranes composed of binary lipid mixtures allows us to construct a semi-empirical
model where protocells are able to reproduce and undergo an evolutionary process based on their coupling with an internal chemistry that supports lipid synthesis.
Scientists have developed a
model of the outer
membrane of the bacteria E.coli providing a brand new tool for developing new antibiotics and other drugs
in the fight against infections.
Aside from antioxidant mechanisms (stabilizing free radicals that would normally damage lipid
membranes and microcirculation), vitamin C can help normalize pain - inhibiting pathways involving dopamine, NMDA, and other neurotransmitters, and has shown promise for a variety of pain conditions
in animal
models.
For example, KBs were recently reported to act as neuroprotective agents by raising ATP levels and reducing the production of reactive oxygen species
in neurological tissues, 80 together with increased mitochondrial biogenesis, which may help to enhance the regulation of synaptic function.80 Moreover, the increased synthesis of polyunsaturated fatty acids stimulated by a KD may have a role in the regulation of neuronal membrane excitability: it has been demonstrated, for example, that polyunsaturated fatty acids modulate the excitability of neurons by blocking voltage-gated sodium channels.81 Another possibility is that by reducing glucose metabolism, ketogenic diets may activate anticonvulsant mechanisms, as has been reported in a rat model.82 In addition, caloric restriction per se has been suggested to exert neuroprotective effects, including improved mitochondrial function, decreased oxidative stress and apoptosis, and inhibition of proinflammatory mediators, such as the cytokines tumour necrosis factor - α and interleukins.83 Although promising data have been collected (see below), at the present time the real clinical benefits of ketogenic diets in most neurological diseases remain largely speculative and uncertain, with the significant exception of its use in the treatment of convulsion disease
in neurological tissues, 80 together with increased mitochondrial biogenesis, which may help to enhance the regulation of synaptic function.80 Moreover, the increased synthesis of polyunsaturated fatty acids stimulated by a KD may have a role
in the regulation of neuronal membrane excitability: it has been demonstrated, for example, that polyunsaturated fatty acids modulate the excitability of neurons by blocking voltage-gated sodium channels.81 Another possibility is that by reducing glucose metabolism, ketogenic diets may activate anticonvulsant mechanisms, as has been reported in a rat model.82 In addition, caloric restriction per se has been suggested to exert neuroprotective effects, including improved mitochondrial function, decreased oxidative stress and apoptosis, and inhibition of proinflammatory mediators, such as the cytokines tumour necrosis factor - α and interleukins.83 Although promising data have been collected (see below), at the present time the real clinical benefits of ketogenic diets in most neurological diseases remain largely speculative and uncertain, with the significant exception of its use in the treatment of convulsion disease
in the regulation of neuronal
membrane excitability: it has been demonstrated, for example, that polyunsaturated fatty acids modulate the excitability of neurons by blocking voltage-gated sodium channels.81 Another possibility is that by reducing glucose metabolism, ketogenic diets may activate anticonvulsant mechanisms, as has been reported
in a rat model.82 In addition, caloric restriction per se has been suggested to exert neuroprotective effects, including improved mitochondrial function, decreased oxidative stress and apoptosis, and inhibition of proinflammatory mediators, such as the cytokines tumour necrosis factor - α and interleukins.83 Although promising data have been collected (see below), at the present time the real clinical benefits of ketogenic diets in most neurological diseases remain largely speculative and uncertain, with the significant exception of its use in the treatment of convulsion disease
in a rat
model.82
In addition, caloric restriction per se has been suggested to exert neuroprotective effects, including improved mitochondrial function, decreased oxidative stress and apoptosis, and inhibition of proinflammatory mediators, such as the cytokines tumour necrosis factor - α and interleukins.83 Although promising data have been collected (see below), at the present time the real clinical benefits of ketogenic diets in most neurological diseases remain largely speculative and uncertain, with the significant exception of its use in the treatment of convulsion disease
In addition, caloric restriction per se has been suggested to exert neuroprotective effects, including improved mitochondrial function, decreased oxidative stress and apoptosis, and inhibition of proinflammatory mediators, such as the cytokines tumour necrosis factor - α and interleukins.83 Although promising data have been collected (see below), at the present time the real clinical benefits of ketogenic diets
in most neurological diseases remain largely speculative and uncertain, with the significant exception of its use in the treatment of convulsion disease
in most neurological diseases remain largely speculative and uncertain, with the significant exception of its use
in the treatment of convulsion disease
in the treatment of convulsion diseases.
A rotary switch
in the rear console of the Maybach 62
models gives the rear passengers complete control over the illumination of the
membrane and strength of the ambient lighting.
When an alternating current is applied to it, the crystals
in the plastic
membrane are arranged
in such a way that the glass becomes transparent and allows daylight into the rear of the Maybach 62
models over its entire area.
Even if a working
model is on the market
in 6 months then think of all the oil that will be needed to make the polymer
membranes.
About Blog Oxford Protein Informatics Group is a research group
in the Department of Statistics at the University of Oxford focusing on aspects of protein
modelling, homology
modelling,
membrane proteins, sequence alignment, antibodies, and drug discovery.