He was also the first to describe the role of tiny molecules in the heart — called microRNAs — which carefully titrate
levels of gene activity to control the fate of cells.
Scientists at the Centre for Genomic Regulation (CRG) in Barcelona, Spain, have developed a new technique to crack the underlying DNA code for the «control dials» that determine
levels of gene activity in bacteria.
Pbo's group thus turned their attention to
levels of gene activity, or transcription.
Publishing their findings in the open - access journal Nature Communications, the researchers discovered DNA sequences for «control dials» that consistently produce very high
levels of gene activity.
Much higher
levels of gene activity were triggered in these experiments than scientists have achieved before, says Michael Hemann, a cancer biologist at MIT.
But new U-M led research shows that the clock may be broken in the brains of people with depression — even at
the level of the gene activity inside their brain cells.
As
the level of gene activity knockdown associated with transgenic RNAi depends on the level of expression of the hairpin constructs, we generated a number of derivatives of our initial vector, called the «VALIUM» series, to improve the efficiency of the method.
Not exact matches
Epigenetics (literally «above the
gene») is a recent scientific development that examines how particular mechanisms can influence whether certain
genes are turned off, turned on, or modify a
gene's
level of activity.
«We wanted to find out if obesity - related
genes and
activity level have an interactive effect on obesity risk — if there is a «double whammy» effect
of being both at genetic risk and physically inactive, beyond the additive effect
of these factors,» said Dr. Wood.
They further theorized that an inhibitory feedback loop
of the PER protein blocks the
activity of the period
gene, so the protein could prevent its own synthesis and thus regulate its own
levels in a constant rhythm.
Co-senior author Professor Jennifer Nichols at the Wellcome Trust - Medical Research Council Stem Cell Institute, said: «Our data allow us to study
gene activity in individual cells to an unprecedented
level of precision.
Borrelli said they observed a remarkable decrease in expression
levels of some 2,000
genes in this area, coupled with a widespread increase in modifications
of basic DNA proteins called histones — particularly those associated with reduced
gene activity.
Dysfunction in dopamine signaling profoundly changes the
activity level of about 2,000
genes in the brain's prefrontal cortex and may be an underlying cause
of certain complex neuropsychiatric disorders, such as schizophrenia, according to UC Irvine scientists.
Interestingly, this study shows that altered dopamine
levels can modify
gene activity through epigenetic mechanisms despite the absence
of genetic mutations
of the DNA.»
These tags are detected and measured using a sensitive DNA analysis technique known as massive, parallel sequencing, providing a quantitative readout
of the
gene's
activity levels.
«There are
genes and proteins that are expressed in a cell and their
activity, or expression
level, changes with time
of day,» explained St. John.
Several groups, for example, have outfitted dead Cas9s with various regulatory factors, enabling them to turn almost any
gene on or off or subtly adjust its
level of activity.
When the researchers treated mice with JQ1, many
of the abnormal
activity levels of Brd4 target
genes returned to normal.
At the core
of this cell behavior is how the loss
of that single
gene changes activation
levels of dozens
of other
genes, suppressing
genes associated with metastatic disease and increasing
activity of genes linked to normal tissue.
We even did
gene - expression studies in flies showing that
genes in their brains change their
level of activity in waking and in sleep.
Nestler: It's, to a first
level of approximation, it's simple and straightforward, that there are a set number
of modifications that could be made to the DNA itself or to the proteins that bind to DNA and control its structure, and
activity and that those small number
of modifications either turn a
gene on or off.
The
gene for MAO - A has several variants, some
of which are associated with relatively higher and lower
levels of enzyme
activity.
For example, some people have a particular variant
of the ADH1B
gene that causes an amino acid change in this enzyme, which leads to faster enzyme
activity so individuals with this variant metabolize alcohol more rapidly which means that acetaldehyde
levels are temporarily increased.
More analysis showed that altering Cdk5
activity changed the
level of several groups
of genes that were also affected by aging, including those that control immunity, energy, and antioxidant
activity.
In all,
activity levels of dozens
of genes in the brain were distinct between the two types
of mice, they report.
To find out how DISC1 acts on synapses, the researchers also compared the
activity levels of genes in the healthy neurons to those with the variation.
«For the first time, we can provide a complete description
of an animal model from
genes to behavior — including at the
level of neuronal network
activity, which has been ignored in most studies to date.»
Dr. Je and his team analysed signalling
activity in neuronal cultures that either did not have the DTNBP1
gene or had lowered
levels of the
gene, because reduced DTNBP1
levels and genetic disruptions
of DTNBP1 in mice resulted in schizophrenia - like behaviours.
They found that, during infection, the
gene had different
levels of activity in the FHB - resistant and susceptible varieties.
In the illustration, each tissue type is followed by the number
of genes whose
level of activity is controlled by nearby
genes on the same chromosome (cis); those whose
activity is associated with
genes on other chromosomes (trans); and the number
of tissue samples studied.
These
genes are more active in the young cave fish than in their sighted counterparts — an elevated
level of activity that triggers cell death in the eye's lens.
The Allen Institute for Brain Science in Seattle, Washington, US, is today launching a four - year, $ 55 - million effort to build a three - dimensional map documenting the
levels of activity of some 20,000 different
genes across the human brain.
This gives a very detailed map
of gene activity, down to the
level of individual cells.
«Resilient mice overcome this change by counteradapting their
gene expression [the suite
of genes that act on the nucleus accumbens that are either turned on or off] to clamp down the
levels of activity in the ventral tegmental area.»
More than 200
genes in the germ - free zebrafish showed
levels of activity different than those in their bacteria - exposed cousins.
Interestingly, many
of the
genes identified in this study have been shown to have lower
gene activity at the molecular
level in autistic post mortem brain tissue samples.
«Micro-RNA regulates the
levels of the target
gene's
activity,» he explained.
The researchers experimentally manipulated estrogen
levels over several months in healthy women with both versions
of the
gene while monitoring their brain
activity as they performed a working memory task.
Changing the accessibility
of genes changes their
activity levels.
Researchers also found that
levels of cAMP and pCREB, possible upstream regulators
of some circadian
genes, were correlated with locomotor
activity.
They assessed
gene activity at time points known to correspond with key phases
of disease: the «induction phase,» the time before the peak
level of photoreceptor cell death; the «execution phase,» when the highest rates
of photoreceptor cell death occur; and the «chronic phase,» during which photoreceptor cell death continues at somewhat reduced
levels.
The CRG team has been working for a long time to achieve detailed quantitative analyses
of Mycoplasma pneumoniae at every
level: from genetics to metabolism, including patterns
of gene activity and protein composition, and more.
«We found significantly higher
levels of metabolic
gene activity in fish exposed to higher temperatures for two generations, indicating that shifts in energy production are central to maintaining performance at higher temperatures.»
It turns out that zinc is vitally important for enabling cells to control the
activity levels of different
genes in our DNA.
The variant is a naturally occurring gain
of function mutation that has been shown to have 8 to 12 times greater
activity levels than the wildtype
gene.
Gene - deficient mice also exhibit signs
of spontaneous inflammatory disease, leading to the hypothesis that 4 - 1BB / 4 - 1BBL interactions also play major regulatory roles which might be manifest at the
level of Treg or regulatory APC that promote Treg
activity.
«In this study, we found two
genes that control
levels of lipids with anti-diabetic and anti-inflammatory
activity, suggesting exciting targets for diabetes and inflammatory diseases,» said co-senior author Alan Saghatelian, who holds the Dr. Frederik Paulsen Chair at the Salk Institute.
Others were unanticipated, including significant differences in expression
levels among
genes involved in fundamental cellular processes such as ribosomal biogenesis, transfer RNA processing, and Notch - signaling — part
of a complex system
of communication that governs basic cellular
activities and coordinates cell actions.
Among females, however, vapors laced with nicotine altered the
activity levels of 148
genes in the brain's frontal cortex.
These studies will investigate the consequences
of ApoF knockdown on cholesterol disposition in an animal model, quantify ApoF
levels in human subjects and identify lipoprotein properties that cause ApoF to bind and subsequently inhibit cholesteryl ester transfer protein
activity, and investigate the molecular mechanisms controlling ApoF
gene expression.