Sentences with phrase «metagenomic sequence data»

Below are the compiled list of tools and links to a few of them, that can be used for primary and secondary analysis of metagenomic sequence data.

Here we describe a pipeline for the functional annotation of viral metagenomic sequence data.

Not exact matches

We analyzed 7.2 terabases of metagenomic data from 243 Tara Oceans samples from 68 locations in epipelagic and mesopelagic waters across the globe to generate an ocean microbial reference gene catalog with > 40 million nonredundant, mostly novel sequences from viruses, prokaryotes, and picoeukaryotes.

In parallel, we use high throughput sequencing methods to obtain both deep phylogenetic rDNA / rRNA tag data and metagenomic and metatranscriptomic functional profiles from size fractions covering the entire plankton community from viruses to fish larvae (Figure 2B and 2C).

The draft genome sequence was assembled with metagenomic data from a patient with periodontitis.

The large volume of sequence data from novel organisms generated by metagenomic projects has triggered the development of specialized databases and tools focused on particular groups of organisms or data types.

We analysed these sequences, along with previously published marine prokaryotic genomes, in the context of marine metagenomic data, to gain insights into the ecology of the surface ocean prokaryotic picoplankton (0.1 - 3.0 μm size range).

Metagenomics: Tools and Insights for Analyzing Next - Generation Sequencing Data Derived from Biodiversity Studies — Anastasis Oulas — Bioinform Biol Insights — May 2015

We have developed a pipeline for taxonomic and functional analysis of metagenomic samples and we also archive your raw sequence data in the SRA on your behalf.

An ensemble strategy that significantly improves de novo assembly of microbial genomes from metagenomic next - generation sequencing data.

Advances in high - throughput DNA sequencing and improved methods for in silico analysis of metagenomic data will be necessary to fully characterize these metagenomes and their associated resistomes.

Finally, nirK sequences were found in the genome of M. frappieri JAM7 and of 34 Methylophaga sp. retrieved from metagenomic studies (Data S3).