Sentences with phrase «nanopore data»

Sara Goodwin and James Gurtowski at Cold Spring Harbor Laboratory have created error correction software for Oxford Nanopore data

We have assembled de novo the Escherichia coli K - 12 MG1655 chromosome in a single 4.6 - Mb contig using only nanopore data.

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.

Not exact matches

«Oxford Nanopore was the first announcement, but they've been roundly criticized for not showing much data,» says chemist Geoffrey Barrall, president of Electronic BioSciences in San Diego, California, which is also developing nanopore seqNanopore was the first announcement, but they've been roundly criticized for not showing much data,» says chemist Geoffrey Barrall, president of Electronic BioSciences in San Diego, California, which is also developing nanopore seqnanopore sequencing.

Two years ago, Oxford Nanopore Technologies demonstrated a revolutionary new sequencing technology at a meeting for genomicists, but it's taken until now for it to show more data and to begin to share its new cheap, hand - held device with researchers.

Title: Analysis Methods for Nanopore Sequencing Data Abstract: Over the last four years nanopore - based sequencing instruments have become widely avNanopore Sequencing Data Abstract: Over the last four years nanopore - based sequencing instruments have become widely avnanopore - based sequencing instruments have become widely available.

After this course you should be able to: - Prepare libraries from genomic DNA for amplicon or whole genome approaches to nanopore sequencing - Run ONT devices and assess sequencing performance during a run - Understand the basics of ONT data handling and analysis - Analyse and interpret ONT amplicon data and whole genomic data from bacterial samples

Introduction to ONT devices and latest technology Wet lab training and best practices for sample quality and library preparation for Nanopore sequencing Running MinKNOW and real - time sequencing data handling Introduction to basecalling and analysis tools (ONT and opens source) for analysis of ONT data

New generation of sequencing technology uses nanopores to deliver ultra long read length single molecule sequence data, at competitive accuracy, on scalable electronic GridION platform.

npReader (jsa.np.f5reader) is a program that extracts Oxford Nanopore sequencing data from FAST5 files, performs an initial analysis of the date and streams them to real - time analysis pipelines.

The researchers accomplished their feat using the MinION nanopore sequencer, reading almost a hundred billion base pairs of data and analyzing huge chunks of DNA.

IONiseR provides tools for the quality assessment of Oxford Nanopore MinION data.

NanoOk — Flexible, multi-reference software for pre - and post-alignment analysis of nanopore sequencing data, quality and error profiles

Motivation: Oxford Nanopore's MinION device has matured rapidly and is now capable of producing over one million reads and several gigabases of sequence data per run.

The recently introduced Oxford Nanopore MinION platform generates DNA sequence data in real - time.

Recently, genome assemblies using Oxford Nanopore MinION data have attracted much attention due to the portability and low cost of this novel sequencing instrument.

This instant access extends to the analysis of sequence «squiggle» data even before a read has finished traversing the nanopore.

NanoOK: Multi-reference alignment analysis of nanopore sequencing data, quality and error profiles

We have sequenced the genome of the endangered European eel using the MinION by Oxford Nanopore, and assembled these data using a novel algorithm specifically designed for large eukaryotic genomes.

I mainly work on data generated by whole genome sequencing, whole exome sequencing, targeted resequencing, RNA - seq and Nanopore Sequencing using MinION.