Sentences with phrase «non-aligning reference sequences»

These non-aligning reference sequences are absent from the query and are either the result of DNA gain in the reference or DNA loss in the query.

Using the coordinate mappings of the 5 ′ and 3 ′ adjacent chain - blocks of each chain - gap, the non-aligning reference sequence of a chain - gap is inserted into the query genome at the corresponding position, where placed gaps are oriented relative to the genome they are placed in.