Sentences with phrase «nucleotide database»

Hits with a better match in the GenBank nonredundant nucleotide database (NT), corresponding predominantly to human genomic background sequences resulting from misannotations in GenBank, were excluded from the analysis.

All sequence reads were aligned to (1) plasmid sequences available in the NCBI RefSeq database (2138 sequences) and (2) sequences in GenBank nucleotide database annotated as plasmids (\ organism feature = «plasmid»)(9815 sequences).

Original genome annotations were obtained directly from the NCBI nucleotide database.

Sequences are deposited at the EBI nucleotide database with accession numbers: Neandertal 1 (Feldhofer 1) FM865407, Neandertal 2 (Feldhofer 2) FM865408, Sidron 1253 FM865409, Vindija 33.25 FM865410, Mezmaiskaya 1 FM865411

Not exact matches

One of the tools, the SNP - Seek database, is designed to provide user - friendly access to a type of genetic marker called single nucleotide polymorphisms (SNPs) identified from this data.

This database is produced at National Center for Biotechnology Information (NCBI) as part of the International Nucleotide Sequence Database Collaboration, odatabase is produced at National Center for Biotechnology Information (NCBI) as part of the International Nucleotide Sequence Database Collaboration, oDatabase Collaboration, or INSDC.

In an ambitious study, the authors attempt to trace drug resistance against all strains of the flu by using an extensive influenza virus database containing all known genetic sequence information (70,000 complete nucleotide sequences) for influenza strains.

To homebrew our gRNA, Wagner copies the sequence of the CD32 segment we've identified and pastes it into a freely available database, Optimized CRISPR Design, that looks for a matching set of 20 nucleotides followed by N - G - G.

The teams then scanned their respective databases for single - nucleotide polymorphisms — regions where the DNA differs by one base — that were associated with being either taller or shorter than average.

Here we report a public database of common variation in the human genome: more than one million single nucleotide polymorphisms (SNPs) for which accurate and complete genotypes have been obtained in 269 DNA samples from four populations, including ten 500 - kilobase regions in which essentially all information about common DNA variation has been extracted.

A tBLASTn of that CDS against the Nucleotide NCBI database revealed no significant similarity to any other sequence, except for the subtelomeres of P. vivax and P. cynomolgi.

In turn, Genbank will distribute the sequence data to the European Molecular Biology Laboratory's Nucleotide Sequence Database, EMBL - Bank [ebi.ac.uk], and the DNA Data Bank of Japan, DDBJ [ddbj.nig.ac.jp].

One of the tools, the SNP - Seek database, is designed to provide user - friendly access to a type of genetic marker called single nucleotide polymorphisms (SNPs) identified from this data.

To ensure that sequence data are freely available, scientific journals require that new nucleotide sequences be deposited in a publicly accessible database as a condition for publication of an article.

For example, an advisory committee made up of members of the European Molecular Biology Laboratory Nucleotide Sequence Database (EMBL - Bank) in the United Kingdom, the DNA Data Bank of Japan (DDBJ), and GenBank of the National Center for Biotechnology Information (NCBI) in the United States oversees the International Nucleotide Sequence Database Collaboration (INSDC).

The nucleotide sequences for all integrases available in the database INTEGRALL [51] were downloaded (1323 sequences) and grouped using single - link hierarchical clustering with a cut - off of 90 % sequence similarity over at least 50 amino acids.

NCBI provides Gene, Online Mendelian Inheritance in Man, the Molecular Modeling Database (3D protein structures), dbSNP (a database of single - nucleotide polymorphisms), the Reference Sequence Collection, a map of the human genome, and a taxonomy browser, and coordinates with the National Cancer Institute to provide the Cancer Genome Anatomy Database (3D protein structures), dbSNP (a database of single - nucleotide polymorphisms), the Reference Sequence Collection, a map of the human genome, and a taxonomy browser, and coordinates with the National Cancer Institute to provide the Cancer Genome Anatomy database of single - nucleotide polymorphisms), the Reference Sequence Collection, a map of the human genome, and a taxonomy browser, and coordinates with the National Cancer Institute to provide the Cancer Genome Anatomy Project.

The NCBI Taxonomy database contains the names of all organisms that are represented in the genetic databases with at least one nucleotide or protein sequence.