Sentences with phrase «nucleotide identities»

Among all 95 fully - sequenced adenovirus genomes in GenBank, the closest simian adenoviral relatives to TMAdV were SAdV - 3, SAdV - 18, and SAdV - 21, with pairwise nucleotide identities ranging from 54.0 % to 56.3 % (Fig. 4).

The fragment shared ∼ 86 % nucleotide identity with its closest phylogenetic relatives in GenBank, SAdV - 18, an Old World vervet monkey adenovirus, and the human species D adenoviruses.

The closest human V gene to all three VHH precursors is VH3 - 23 * 04: B9 and A14 precursor Vg shares 88.19 % and 82.81 % nucleotide identity with VH3 - 23 * 04.

Genomic sequencing of the isolated virus revealed that it is closely related to Tembusu virus (a mosquito - borne Ntaya group flavivirus), with 87 — 91 % nucleotide identity of the partial E (envelope) proteins to that of Tembusu virus and 72 % of the entire genome coding sequence with Bagaza virus, the most closely related flavivirus with an entirely sequenced genome.

XMRV and PMLV are highly related sharing between 87 - 94 % nucleotide identity across their genomes and 88 - 97 % and 88 - 91 % amino acid identity to complete Gag and Env proteins, respectively.

Sequencing and BLAST analysis recealed a 87 — 91 % / 87 % nucleotide identity with a partial coding sequence from the Tembusu / Sitiawan virus E gene (encoding the envelope protein)(Fig. 7A).

XMRV is phylogenetically related to the xenotropic murine leukemia viruses (MuLV) sharing about 94 % nucleotide identity across the viral genome [12].

In addition, average nucleotide identity and inferred DNA - DNA hybridisation analyses showed that NZ1587 (T) represents a novel species.

Taxonomic classification of strain NZ1587 (T) was investigated using 16S rRNA and core genome phylogeny, genome - wide average nucleotide identity (ANI) and predicted DNA - DNA hybridisation (DDH) analyses.

The average nucleotide identity (ANI) analysis was performed at http://enve-omics.ce.gatech.edu/ani/ with window size 1,000 bp, step size 200 bp, minimum identity 70 %, minimum length 700 bp, minimum alignment 50 (Goris et al., 2007; Rodriguez & Konstantinidis, 2016).

Not exact matches

At the nucleotide level the B9 and A14 precursor Vg shares 69.83 % identity with VH1 - 2 * 02 as while B9 and A14 are 68.84 and 68.73 % identical respectively.

The scanning nucleotide pairwise identities of TMAdV relative to representative human (yellow) or simian (brown) adenoviruses in species A — G, porcine adenovirus (red), and fowl adenovirus (green) are shown.

The percentage nucleotide divergence (100 minus the percentage identity) from germ line and from the respective neutralizing VHH sequence for each of the five neutralizing VHH in each of the 13 llamas was examined.

Scanning nucleotide pairwise identity plots revealed that, among the major adenovirus genes, the DNA polymerase and hexon are more conserved, whereas the E1A and fiber are more divergent (Fig. 4).

The nucleotide sequences of Acks cDNA of approximately 7.1 kb in length shared approximately 85 % sequence identity with the European honeybee kakusei cDNA, and had additional unique sequences of approximately 700b at its 3 ′ end.