(b) Archaeogenomic relatedness results for mtDNA (
nucleotide sequence similarity to burial 14) and the nuclear genome.
Not exact matches
However, based on data now available, we see that the
sequence of the 3 billion
nucleotides in any individual genome is unique in comparison with the
sequence of another individual's genome, while the degree of
sequence similarity between the 3 billion
nucleotides in any two genomes is remarkably high.
A tBLASTn of that CDS against the
Nucleotide NCBI database revealed no significant
similarity to any other
sequence, except for the subtelomeres of P. vivax and P. cynomolgi.
BLAST - based
similarity searches are commonly used in several applications involving both
nucleotide and protein
sequences.
The
nucleotide sequences for all integrases available in the database INTEGRALL [51] were downloaded (1323
sequences) and grouped using single - link hierarchical clustering with a cut - off of 90 %
sequence similarity over at least 50 amino acids.