Over the next three years, the five centers in NHGRI 19s Large - Scale Sequencing Research Network will use high - throughput, robotic technologies to sequence a strategic set
of animal genomes totaling as much as 54 billion base pairs, or the equivalent of 18 human genomes.
Not exact matches
This is because large chunks
of our
genome perform similar functions across the
animal kingdom.
Also found in the water bear
genome were more copies
of an anti-oxidant enzyme and a DNA repair gene than in any other
animal.
If you take the
genomes of any two
animals on this planet (yes, including homo sapiens - we are advanced
animals), and plot out the corresponding similarities down to the very last letter, what you're left with is a perfect hierarchy (or family tree).
And as for the origin
of species and evolution in terms
of the scientific method, that scientific method has given us the ability to decode the DNA
genome of many
animals, and to show where, back in time, the various relatives
of man and modern apes, for example, branched off into separate species.
The understanding
of how other
animals do it, plus the understanding
of our own
genome and development mechanisms makes this possible within the next 50 years.
All
animal cells are made up
of two
genomes, the nuclear
genome with 10,000 s
of protein coding genes and the mitochondrial
genome with 13 protein - encoding genes.
In a new study, researchers at the University
of Miami (UM) Rosenstiel School
of Marine and Atmospheric Science examined how the interaction
of two
genomes in
animal cells — the mitochondrial and nuclear
genomes — interact to affect adaptation
of the Atlantic killifish to different temperatures.
Created by a Minnesota - based company called Recombinetics, the hornless cattle are the first
of a new wave
of farmed
animals developed using techniques that, unlike conventional genetic engineering, involve no «foreign» DNA (see «How to tweak a
genome «-RRB-.
«These predictive algorithms seem to do a good job when CRISPR is performed in cells or tissues in a dish, but whole
genome sequencing has not been employed to look for all off - target effects in living
animals,» says co-author Alexander Bassuk, MD, PhD, professor
of pediatrics at the University
of Iowa.
In the Eickbush lab, he began a study
of the evolutionary relationships among non-long-terminal-repeat (non-LTR) retrotransposons, which are abundant in the
genomes of animals, plants, and fungi.
The study, published in the journal G3: Genes
Genomes Genetics, adds to a growing body
of evidence suggesting that domestication alters
animals» reactivity to stress.
Using this process, scientists can make targeted mutations in the
genomes of living
animals, either deleting genes or inserting new ones.
Last week, a research consortium posted the draft sequence
of the naked mole rat's
genome online; further study may unlock the genetic clues to this unique
animal's survival abilities.
The toolbox
of rat genetics currently lacks the ability to introduce site - directed, heritable mutations into the
genome to create knockout
animals.
The differences they found in the cat
genome help explain characteristics such as why cats are almost exclusively carnivorous and how their vision and sense
of smell differ from other
animals like dogs.
He and his colleagues had reconstructed the partial
genome of a woolly mammoth found frozen in Siberia, and he was convinced that researchers like himself would soon be able to take bits
of degraded tissue samples, extract ancient DNA and use them to piece together whole
genomes of extinct
animals.
However, the results
of more recent phylogenetic analyses, derived from comparisons between sequences
of specific genes and
of whole
genomes, seemed to point to Ctenophora as the first group that parted company with the lineage from which the rest
of the
animal kingdom (including sponges) evolved.
In the unlikely event that scientists could reconstruct a complete dinosaur
genome, she doubts that any modern
animal could produce an egg capable
of growing a dinosaur embryo.
By comparing the
genomes of 203 vertebrates, they first traced the origin
of KZFPs back to a common ancestor
of tetrapods (four - legged
animals) and coelacanth, a fish that evolved over 400 million years ago.
But everything we're learning from the human and
animal genome projects, about the conservation
of neurochemistries and the neuroanatomies, all
of this points me to the conclusion that we are learning about ourselves when we study these little critters.»
Two clusters
of changes in the viral
genome were observed in one
of the
animals that succumbed.
Sequencing the
genome of one such organism, King and her colleagues found genes that code for pieces
of the same proteins used for the binding
of cells and communication between cells in
animals — functions that would be unexpected in such an organism.
With a grant from the Morris
Animal Foundation, Antczak, his collaborators Samantha Brooks and Ann Staiger from the University
of Florida, and the rest
of the team applied a genomewide association study to compare the genetic makeup
of horses with and without sarcoid tumors at more than 50,000 sites in the equine
genome.
They sequenced the first whole
animal, the flatworm, in 1998, and then pushed the systems to handle big chunks
of bigger
genomes — billions
of base pairs.
«The study analysed the
genome of these eight species and performed comparative analysis
of animal genes important for signalling, neuronal and ionic conduction, epithelia, immunity and reproduction, which are the basic functions associated to multicellularity,» she adds.
But some
animals carry more than two complete sets
of the
genome, referred to as polyploidy.
«Our vision is to apply the same approach but rapidly screen non-synthetic, biological or «natural» molecules cloned from human or other
genomes, including those
of plants,
animals and microbes,» he said.
For some, de-extinction means the literal resurrection
of long - lost species through whole -
genome cloning, while for others it's about conferring the traits
of extinct
animals on closely related living species to create approximations.
The sequencing
of the oldest mammalian
genome from an ancient polar bear jawbone provides clues about these
animals» fraught relationship with climate change
Most
animals, including humans, have two copies
of their
genome — the full set
of instructions needed to make every cell, tissue, and organ in the body.
UC Berkeley developmental biologist Nipam Patel uses Crispr - Cas9 to edit the
genomes of butterflies, crustaceans and other
animals to learn how an organism forms.
The first
of these will focus on the potential use
of genome editing in human reproduction to avoid the transmission
of heritable genetic conditions, and the second on livestock to improve systems
of animal husbandry and food production.
Rennie: Right, yeah, actually it is pretty astonishing that in many respects during these past 6 million years which are just, you know, a tiny piece
of animal evolution within those portions
of the
genome where you're seeing differences pop up.
«
Animal viruses typically have all
genome segments packaged together into a single viral particle, so only one
of those particles is needed to infect a host cell,» Ladner explained.
Hughes's winning research proposed using microarray techniques to compare the
genomes of a variety
of vertebrate
animals to test for common regulatory elements that determine gene expression.
There, during a lecture, he learned that the
genomes of viruses infecting plants and
animals are actually very similar, even though plants and
animals are very different.
«All the sudden you can do these sorts
of studies in scrub jays and other
animals that are not a [laboratory] organism,» says Joseph Pickrell, an evolutionary geneticist at the New York
Genome Center in New York City, who was not involved with the work.
Preventing the transmission
of inherited genetic diseases, and increasing food production rates in farmed
animals are two potential applications
of genome editing technologies that require urgent ethical scrutiny, according to a new report by the Nuffield Council on Bioethics.
«It's one
of the smallest
animal genomes ever reported.
The team identified thousands
of accelerated regions in each
animal genome.
It represents only a small fraction
of an
animal's
genome (the rest is nuclear DNA), and because it is transmitted only from the mother, it reveals just the genetic history
of females.
Dr. Frankel is currently directing or co-directing projects related to the ethical and policy implications
of human germ - line interventions, the responsible use
of animals in biomedical and behavioral research, improving patient safety and reducing errors in health care, the ethical dimensions
of the Human
Genome Diversity Project, the uses
of anonymity on the Internet, and intellectual property and ethical standards for electronic publishing in science.
From a bat's wings to an elephant's cancer resistance, an interdisciplinary team
of scientists at University
of Utah Health are using
animals» unique traits to pinpoint regions
of the human
genome that might affect health.
Earlier studies looked at many genes from a few
animals or a few genes from many
animals, but Brown University biologist Casey Dunn and his team cast a wider net, sampling DNA from all across the
genomes of 71 different
animals.
Was it mutations in the
genome of Y. pestis or changes in the susceptibility
of animal or human hosts — or both?
Many people feared that retroviruses lurking in
animal genomes could harm transplant recipients, but this year a team eliminated, in one fell swoop, 62 copies
of a retrovirus's DNA littering the pig
genome.
For the first time, they have decoded the
animal's
genome; their findings appear in the current issue
of the journal PLOS ONE.
A new look at a virtual zoo - full
of animals, from hummingbirds to bats to elephants, suggests that many vertebrate
genomes have the same accordion - like properties.
(Ill - fitting because humans have been indirectly, and much less precisely, modifying plant and
animal genomes for thousands
of years via selective breeding, and evolution has been doing it for as long as there has been life on Earth.)