The depth of insight is limited only by the numbers
of cells sequenced and cheaper sequencing will enable us to see far back to the early stages of life, and study inter-individual variation in development.
Not exact matches
By collecting
sequencing information about
cells in the gut, for example, Kallyope can better figure out how they're connected to neurons in the brain in a series
of circuits.
That's attached to the progress
of sequencing technology, the ability to edit
cells, and other gene editing approaches have been transformative in the immunotherapy world in recent years.
Researcher Aviv Regev's «lab has gone from looking at 18
cells at a time to
sequencing RNA from hundreds
of thousands.»
Using advances in genomic
sequencing, the human microbiome, proteomics, informatics, computing, and
cell therapy technologies, HLI is building the world's most comprehensive database
of human genotypes and phenotypes as a basis for a variety
of commercialization opportunities to help solve aging related disease and human biological decline.
From which it follows, ultimately, that the self must be regarded as a series
of momentary selves the unity
of each
of which can only be regarded as the unity
of a complex set
of what I will refer to as «interrelated event -
cells,» while the unity
of the more general sense
of «person» or «self» can only be regarded as the unity
of a
sequence or succession.
People
of every nation, color, language, belief, and condition are now known to possess in their body
cells trait factors drawn by an inconceivably complex
sequence of intercombinations from a common «gene pool.»
The evolutionary
sequence from protons, molecules,
cells, plants and animals to people would be interpreted as an increase in complexity
of experience and degree
of self - determination.
@Chad: I. Mutations in DNA
sequences generally occur through one
of two processes: A. Environmental factors: DNA damage from environmental agents such as ultraviolet light (sunshine), nuclear radiation or certain chemicals B. Mistakes that occur when a
cell copies its DNA in preparation for
cell division.
«
Cells have not selected against dynamic oscillations in their control circuits, but have made use
of them to organize the staggering complexity
of cellular dynamics into a well - ordered rhythmic
sequence of biochemical processes.
I love biology, every pain staking detail
of DNA - one mess up in an amino acid
sequence and you get sickle -
cell anima, or the proteins don't function correctly.
The existing patterns
of physical feeling in my brain
cells have to be deflected repeatedly by fresh novelty — now this way, now that way, in a tedious
sequence of trial - and - error, before these tiny bodily societies learn the new patterns which enable them to respond to my aims to type.
Each
of these
cells, like the psyche, is a
sequence of actual occasions
of experience, each with its own reality and measure
of autonomy.
«This agreement is wonderful,» says Jay Shendure
of the University
of Washington, who has
sequenced 10 strains
of the
cells.
To determine how the
cells switch from one type to another, they took three human uterine carcinosarcoma samples and
sequenced the genomes
of cells in two parts
of each tumor: the carcinoma and sarcoma components.
While all
cells in a specific organism share the identical DNA
sequence, only a fraction
of those genes are activated in a given
cell type.
Lacks» family was never asked for permission to harvest her
cells, an ethical violation made worse in March when German researchers published the
sequence of the HeLa genome without asking.
These modifications represent a layer
of information that can be passed from a parent
cell to a daughter
cell but is not encoded in the DNA
sequence.
«If we could use gene editing to remove the
sequences in an embryo that cause sickle
cell disease or cystic fibrosis, I would say not only that we may do so, but in the case
of such severe diseases, we have a moral obligation to do so.»
The team designed DNA circuits that simultaneously test for 24 distinct regions
of viral RNA — more than would have been possible using only naturally occurring DNA
sequences (
Cell, doi.org/wn4).
«It's difficult to make contrived samples behave like actual
cell - free nucleic acids, so that's been quite a challenge,» says Kelli Bramlett, director
of R&D in clinical
sequencing and oncology at Thermo Fisher Scientific in Waltham, Massachusetts.
But to coax them down a specific path in the lab requires recreating the precise
sequence and timing
of environmental cues in the womb — the signals from proteins and hormones that tell
cells what kind
of tissue to become.
«We couldn't have figured out what was happening without the expertise
of our collaborators at U.C. Davis, who determined the genetic
sequence of every single
cell marker on the
cells in the lymph nodes,» says Miller.
Zhang's group is moving beyond bulk
sequencing of tumor samples and is now conducting genomics on single
cells.
«However, because SIF - seq only requires DNA
sequence from a mammal and can be used in a variety
of cell types, it should be possible to compare the neuronal enhancers present in a large genomic region from human to the neuronal enhancers present in the orthologous chimpanzee region.
The kit also preserves the single - nucleotide variants (SNVs) and SNV frequencies across different
sequencing technologies and allows the amplification
of cell - free DNA to levels that permit
sequencing.
The man responsible for one
of the original
sequences of the human genome as well as the team that brought you the first living
cell running on human - made DNA now hopes to harness algae to make everything humanity needs.
«These predictive algorithms seem to do a good job when CRISPR is performed in
cells or tissues in a dish, but whole genome
sequencing has not been employed to look for all off - target effects in living animals,» says co-author Alexander Bassuk, MD, PhD, professor
of pediatrics at the University
of Iowa.
Umen focused on the «mating locus» (MT)-- the genetic
sequence behind the making
of sex
cells.
Bingwei Lu, a neuroscientist at Stanford University in California, has shown that a microRNA
sequence which suppresses certain genes is linked to the death
of brain
cells in fruit flies.
Now scientists think they have cracked the code: Insect nerve
cells appear to fire in a
sequence unique to each smell, says a report in the 14 November issue
of Nature.
It's well established,
of course, that environmental effects like radiation, which alter the genetic
sequences in a sex
cell's DNA, can leave a mark on subsequent generations.
Slight modifications in their genome
sequences play a crucial role in the conversion
of pluripotent stem
cells into various differentiated
cell types.
«We were looking at the amino acid
sequences of T
cell receptors when Tomer asked what the corresponding epitope was for a particular receptor,» Thomas said.
Even after the principles
of epigenetics came to light, it was believed that methylation marks and other epigenetic changes to a parent's DNA were lost during the process
of cell division that generates eggs and sperm and that only the gene
sequence remained.
To start, she used a cotton swab to get a sample
of cells from her cheek, boiled them in a test tube in her kitchen to free the DNA, then added primers, nucleic acids that mark the part
of the
sequence.
An analysis
of the HPV16 genome from 5,570 human
cell and tissue samples revealed that the virus actually consists
of thousands
of unique genomes, such that infected women living in the same region often have different HPV16
sequences and variable risks to cancer.
The tools included TCRdist, which researchers used to calculate the similarity and differences
of key features
of T
cell receptors, such as amino acid
sequences in important regions for antigen recognition.
After deciphering this natural differentiation process, the investigators duplicated it in the laboratory dish by adding a
sequence of proteins, called growth factors, to the fluid bathing the stem
cells.
All
of them were found in the synthetic
cell when it was
sequenced.
By delivering this version
of Cas9 along with the guide RNA strand into single
cells, the researchers can target one genetic
sequence per
cell.
To address this gap in knowledge, Mirabello and Schiffman teamed up with co-senior author Robert Burk
of Albert Einstein College
of Medicine to
sequence the whole genomes
of 5,570 HPV16 - infected
cell and tissue samples from women around the world and to identify associations between HPV16 genetic variants and the risk
of cervical precancer and cancer.
CRISPR is a combination
of an enzyme that can cut a selected DNA
sequence and a «guide RNA» that takes the enzyme exactly where you want to make the cut — in this case, at the sickle
cell mutation.
Scientists investigating the earliest stages
of cancer development used an exquisitely sensitive
sequencing method capable
of detecting DNA mutations present in as few as 1.6 per cent
of blood
cells, to analyse 15 locations in the genome, which are known to be altered in leukemia.
There, some
of the added DNA was swapped with the matching target
sequences in the
cells» genomes.
Through a variety
of «high tech» approaches, including the isolation
of monoclonal antibodies from single B
cells and ultra-deep
sequencing of shifting viral populations over more than three years
of infection, the researchers studied one woman who developed potent broadly neutralizing antibodies.
Project members also catalogued
sequences that mark areas where DNA unwinds from the round histone proteins that maintain the shape
of chromosomes, allowing the
cell's transcription machinery to activate genes in those areas.
Bar coding typically involves
sequencing a few short segments
of animal DNA from the mitochondria, the mini-organs that produce energy within every
cell.
12 Telomeres,
sequences of DNA at the tips
of chromosomes, get shorter every time a
cell divides; when they get too short, the
cell dies.
A major part
of the project was identifying
sequences that
cells copy, or transcribe, into RNA molecules.