Because the pathophysiology of cancer is linked to alteration
of cellular gene expression, the bioinformatics toolbox promises to offer countless molecular insights into mechanisms, diagnostics, and new medical interventions for cancer.
To account for the remarkable similarity between retrovirus oncogenes and their normal cellular kin, most virologists have settled on the idea that retrovirus oncogenes are copies
of cellular genes.
«In contrast to RNA interference, which is commonly used to inactivate gene activity, the CRISPR - on system allows activation
of cellular genes.
Not exact matches
Experiments proved that Heat Shock Factor 1 (HSF1), a sort
of protective switch against some types
of cellular stress, could bind to the TTR
gene's promoter (a segment
of DNA near the TTR
gene).
The disruption
of prenatal
cellular activity in zebra fish, which share 80 percent
of their
genes with humans and are considered a good model for studying human brain development, seemed to result in hyperactivity, according to the Canadian study, which was published Monday in the Proceedings
of the National Academy
of Sciences.
A host
of other
genes, which control many other
cellular processes do not show such abnormal DNA methylation after smoke exposure.
Scientists hacked the machinery
of cellular warfare to splice
genes.
The boosted
genes had three main effects: improving
cellular energy efficiency; upping insulin production, which improves control
of blood sugar; and preventing the breakdown
of caps on chromosomes that help prevent cells wearing out and ageing.
Sequence analysis
of the virus revealed numerous
genes previously thought to exist only in
cellular organisms.
The
gene signature identified by Hancock and his colleagues relates to a special type
of immune suppression called
cellular reprogramming and suggests that treating inflammation in sepsis is a bad idea.
Mothers Against Decapentaplegic: This
gene helps control the biochemical translation
of cellular messages.
Like all retroviruses, HIV has very few
genes of its own and must take over the host's
cellular machinery in order to propagate and spread throughout the body.
Gene Yeo, a professor
of cellular and molecular medicine at UCSD, led the research and showed he could target RNA in living cells, a first step toward treating diseases like muscular dystrophy and neurodegeneration.
This enabled the researchers to detect mutations in three
genes — GNPTAB, GNPTG, and NAGPA — involved in the function
of lysosomes, the
cellular sacs where debris gets recycled.
Some
of those matching
genes are vital for embryo survival, including several responsible for cell communication,
cellular energy and adhesion to the lining
of the uterus.
In humans, stuttering has long been linked to a mutation in the «housekeeping»
gene Gnptab, which maintains basic levels
of cellular function.
The pilot project tested a dozen or so
of the most commonly used
gene promoters (regions
of DNA that facilitate
gene transcription) and segments
of DNA that encode ribosome - binding sites (sequences
of messenger RNA that control protein translation) to determine whether they behave consistently in different
cellular contexts.
To do this, they created a
cellular model
of Werner syndrome by using a cutting - edge
gene - editing technology to delete WRN
gene in human stem cells.
Although there are several ways to remove RB from the
cellular machinery, the group found that complete loss, rather than inactivation,
of the RB
gene was associated with changes in
gene - networks closely linked to aggressive disease.
Researchers did not understand what normally kept ras
genes» protein production in check — and why certain ras mutations led to such chaotic, uncontrolled
cellular activity — until the discovery
of a snippet
of genetic material called microRNA (miRNA).
When researchers suppressed the ARF
gene in mole - rat cells during the reprogramming process to iPSCs, the cells stopped proliferation with sign
of cellular senescence, while the opposite happens with mouse cells.
This so - called microRNA disrupts the expression
of two key
cellular genes called TGF - β and SMAD3, in a process known as RNA interference (RNAi).
A forward genetic screen in Drosophila melanogaster (fruit flies) identified mutant copies, or alleles,
of a
gene called cacophony associated with defects in autophagy and
cellular homeostasis.
The
gene Apc is like a club bouncer: It keeps
cellular parties from growing out
of control.
Kolodner describes the mismatch repair
genes as performing the «
cellular equivalent
of a spellchecking function».
The researchers developed a computational framework to determine the structure
of protein interaction networks in each sample and infer which
genes performed different
cellular functions within these networks.
They found many
of the 131 regions were related to
genes involved in growth and development and
cellular function and maintenance.
Analysis
of the tumor
genes affected by the two drugs revealed that cabazitaxel had a greater effect on
cellular division and regulation
of chromatin — a spool for DNA that helps control which
genes are in use and when — whereas docetaxel has a greater impact on DNA transcription and repair.
As scientists began to sequence human
genes in the 1990s, sorting out the
cellular locations
of each
gene's proteins became a priority, says Mathias Uhlén, a microbiologist at the Royal Institute
of Technology in Stockholm, Sweden, and director
of the Protein Atlas effort.
In particular, this region
of the
gene might serve as a landing place for
cellular machinery that binds to the DNA and reads it, Nikolova said.
They found a mechanism explaining how, in the case
of pathological cardiac hypertrophy, cardiomyocytes lose their adult
cellular state and regress back towards their fetal form, switching on
genes that were originally expressed as the heart develops in the embryo and usually permanently switched off after birth.
Scientists
of Helmholtz Zentrum München and Ludwig - Maximilians - Universität Munich (LMU) have discovered that two new classes
of histone modifications couple
cellular metabolism to
gene activity.
Optogenetic methods and tools have evolved fast, and in addition to be able to control
cellular activity, researchers can now control the activity
of gene function.
Named after the IBM Blue
Gene supercomputer it relies on, the Blue Brain Project has started modelling — in every detail — the
cellular infrastructure and electrophysiological interactions within the cerebral neocortex, which represents about 80 %
of the brain and is believed to house cognitive functions such as language and conscious thought.
The
cellular functions that Finch studied for his «second Ph.D.» included the activation
of the
gene that encodes tyrosine aminotransferase (TAT).
«Because many broadly expressed
genes that play key roles in essential
cellular functions are under the control
of cell - specific enhancers, the ability to affect enhancer function by knocking down eRNAs could potentially provide a new strategy for altering
gene expression in vivo in a cell - specific manner,» said Glass, noting that in his research, anti-sense oligonucleotides were developed in conjunction with Isis Pharmaceuticals, which suppressed enhancer activity and reduced expression in nearby
genes.
Yamanaka's group and two others followed up earlier this year with firmer evidence that these induced pluripotent stem (iPS) cells faithfully mimicked the patterns
of gene activity and
cellular differentiation observed in embryonic stem cells.
«Calcium signaling regulates many important
cellular functions, like muscle contraction, neural communication,
gene transcription and tissue growth,» said Fenfang Li, a postdoctoral research fellow in Zhong's laboratory and lead author
of the study.
While her postdoc work is not related directly to cystinosis, she hopes there are aspects
of the
gene therapy and
cellular therapy skills she is learning at Scripps that will be transferable to her work with the disease.
Understanding the best ways to work with RNA and the various RNA detection methods can help scientists advance our understanding
of gene expression patterns and elucidate the roles
of different genomic elements in
cellular function and dysfunction.
A «perfect storm» leads to the collapse
of almost all the molecular functions
of SRY, including
cellular trafficking, stability, DNA recognition and
gene regulation.»
Scientists led by John Kuwada, professor
of molecular,
cellular and developmental biology at the University
of Michigan, and Hiromi Hirata
of the National Institute
of Genetics in Japan originally identified the
gene in mutant zebrafish that exhibited severe muscle weakness.
And many
of the highlighted human
genes are associated with the same critical
cellular operations, such as the cell's protein - building factories, as in those species, MacArthur's group reports.
The
gene plays a key role in
cellular proliferation and is activated in 90 %
of all human pancreatic tumors.
The analysis also showed that the preponderance
of host responses shifted rapidly from activation
of genes involved in cell damage and inflammation toward those linked to promotion
of cellular and organ repair.
A total
of 1738 predicted protein - coding
genes were identified; however, only a minority
of these (38 percent) could be assigned a putative
cellular role with high confidence.
By comparing the
gene expression patterns
of normal beta cells and insulin - producing cells derived from alpha cells, the researchers confirmed nearly complete
cellular reprogramming.
At the
cellular level, although they share canonical types
of inhibitory interneurons (INs) and excitatory principal neurons (PNs), it remains largely unknown to what extent a single type in different brain regions displays similarity in
gene expression, axonal shape, connectivity, and developmental origins.
With just 121 protein - coding
genes, the diminutive Tremblaya princeps, a symbiotic bacterium that lives inside specialized cells
of the sap - eating mealybug, has the smallest known genome
of any
cellular organism on the planet.
The goal
of the NIH program, as described on its website, is «to understand the principles behind the three - dimensional organization
of the nucleus in space and time (the fourth dimension), the role nuclear organization plays in
gene expression and
cellular function, and how changes in the nuclear organization affect normal development as well as various diseases.»