Performing genetic studies in multiple human populations can identify disease risk alleles that are common in one population but rare in others, with the potential to illuminate pathophysiology, health disparities, and the population genetic origins
of disease alleles.
Variation in genetic background may alter expression
of the disease allele in affected animals, thus accounting for variation in phenotypic expression of the disease.
Not exact matches
Individuals were classified as high risk for Alzheimer's if a DNA test identified the presence
of a genetic marker — having one or both
of the apolipoprotein E-epsilon 4
allele (APOE - e4
allele) on chromosome 19 — which increases the risk
of developing the
disease.
The process then evaluates the frequency
of these
alleles, using the results to chart
disease progression and assess the effectiveness
of treatment.
Within three weeks, they had collected the data that would fuel a series
of landmark papers showing that the APOE4
allele is associated with a greatly increased risk
of Alzheimer's
disease.
The obvious step, Roses realized, was to find out whether individual APOE
alleles influence the risk
of developing Alzheimer's
disease.
Additional analysis
of UK Biobank data from 112,338 people
of European ancestry revealed that a specific form
of rs9349379 known as the G
allele, which was present in 36 %
of these individuals, was associated with an increased risk
of coronary artery
disease.
Several variants, such as the HLA B * 5701
allele, have been associated with the pace
of HIV
disease progression in both controllers and «normals.»
Reviewing thousands
of genome wide associate studies (GWAS) to identify genetic variants in single nucleotide polymorphisms (SNPs), investigators at Dartmouth's Norris Cotton Cancer Center found that some
alleles (one
of a pair
of genes located on a specific chromosome) are more frequently risk - associated with
disease than protective.
«Our findings show that a specific genetic marker (known as
allele * 2
of the HS1, 2 A enhancer region) influences not just
disease activity in RA patients, but also response to therapy in the early stages
of their
disease,» said lead investigator Dr Gabriele Di Sante
of the Institute
of Rheumatology and Related Sciences, Catholic University
of the Sacred Heart, Rome, Italy.
Genotyping
of a population
of 329 patients with early RA revealed just over one - quarter had the
allele * 2 HS1, 2 A enhancer, and one in 10 the
allele * 1 HS1, 2 A enhancer, which is comparable with previously published data.7 Patients with the
allele * 2 genotype had more active
disease at the start
of treatment and were significantly less likely to achieve a good response and / or remission after three months treatment than those patients with the
allele * 1 genotype.
Valeriya Lyssenko
of Lund University in Malmö, Sweden, and her colleagues set out to determine whether detecting common forms, or
alleles,
of nine diabetes - linked genes could predict who would develop the
disease among a large population.
4
allele, which is known to increase risk
of Alzheimer's
disease, influenced the link between sleep - disordered breathing and cognition.
4
allele, are at increased risk
of Alzheimer's
disease.
Because
diseases can be endemic to specific regions
of the world, these genes exist in thousands
of versions, known as
alleles.
Even more interesting, the
allele is a variant
of a gene that might actually be part
of the
disease process.
The
alleles for lactose intolerance and lactose tolerance represent time - tested genes
of the human race, just the opposite
of the
alleles of the Finnish
Disease Heritage, which are native born and recent.
With patented DNA chips and corporate backers, he is looking for
alleles that distinguish healthy Finns from patients with a family history
of heart
disease.
Pickrell also reported that the frequency
of the ApoE4
allele, which is associated with Alzheimer's
disease, drops in older people because carriers died early.
Carriers
of the apolipoprotein (ApoE) ɛ4
allele are at greater risk for developing late - onset Alzheimer's
disease (AD), develop AD at an earlier age, and experience a more severe cognitive decline and shorter survival times.
In addition, in two
of the datasets where researchers had age -
of - onset data for age - related
diseases, they found that certain longevity
alleles also were significantly associated with reduced risks for cardiovascular
disease and hypertension.
It also contains some
of the most variable human genes: hundreds
of versions — or
alleles — exist
of each gene in the population, allowing our bodies to react to a huge number
of disease - causing agents and adapt to new ones.
A new study published in the current issue
of Biological Psychiatry suggests that even when controlling for the risk for Alzheimer's
disease, the APOE ε4
allele also conveys an increased risk for late - life depression.
«Careful analysis
of the total number
of repeats, the number
of interruptions in the repeat tract, and the methylation status
of the FMR1 gene is important for a proper understanding
of an individual's risk
of transmission
of larger
alleles to their offspring and to their personal risk
of disease pathology.
The research also demonstrated how these non-random outcomes can be harnessed to produce a desired effect, such as a gene knockout or the reading frame restoration
of a
disease - causing
allele.
In fairness, I had a fairly unexciting 23andMe profile, absent
of hidden Mendelian
disease alleles or high - penetrance variants for late onset
disease.
Despite reduced levels
of mRNA expression, the homozygous lethal Xpd † XPCS
allele ameliorated multiple XpdTTD - associated
disease symptoms in compound heterozygous XpdTTD / † XPCS animals including the hallmark brittle hair and cutaneous features fully penetrant in homo - and hemizygous TTD mice (Figure 2A — 2C).
Genome - wide association studies (GWAS) have demonstrated a significant polygenic contribution to bipolar disorder (BD) where
disease risk is determined by the summation
of many
alleles of small
This classification
of alleles as either causative or null currently defines what we refer to as a «monoallelic» paradigm
of XPD
disease.
We report a variety
of biallelic effects on organismal phenotype attributable to combinations
of recessive Xpd
alleles, including the following: (i) the ability
of homozygous lethal Xpd
alleles to ameliorate a variety
of disease symptoms when their essential basal transcription function is supplied by a different
disease - causing
allele, (ii) differential developmental and tissue - specific functions
of distinct Xpd
allele products, and (iii) interallelic complementation, a phenomenon rarely reported at clinically relevant loci in mammals.
In contrast to two hemizygous XPDXPCS patients carrying the XPDG47R - or XPDR666W - encoding
alleles who died
of the
disease before 2 y
of age, two compound heterozygous XPDXPCS patients carrying the same XPDG47R - or XPDR666W - encoding
alleles in addition to the presumed null XPDL461V + del716 − 730 both had considerably milder
disease symptoms and survived more than ten times longer (A. Lehmann, personal communication)(Figure 5).
Examples
of compound heterozygous patients in which a second, presumed null
allele is likely to contribute to
disease outcome are provided above in comparison to corresponding homo - or hemizygous patients with the same causative
allele.
We further found that in about 15 %
of patients with FLT3 - ITD mutations, loss
of the wt - FLT3
allele can be observed, and these patients have a particularly poor outcome, with a median
disease free survival between 4 and 6 months.
However, prevailing GWA data analysis methods are focusing on the association
of individual SNP
alleles with a complex
disease, although multiple
alleles are involved by definition.
DONG ET AL.The
allele apolipoprotein E ε4 (APOE ε4) is the greatest genetic risk factor for Alzheimer's
disease (AD), but the role
of the ApoE4 protein in AD has long been elusive.
To determine why previously described mutated EYA4
alleles cause SNHL without heart
disease, we examined biochemical interactions
of mutant Eya4 peptides.
Alternatively, a basic gene drive could spread protective
alleles through a population in advance
of an impending ecological or
disease - based challenge.
At the same time, several studies have outlined the fine specificity
of different closely related
alleles, in some cases clearly associated with predisposition to
disease resistance or susceptibility.
Not so long ago, there was a hope in the research community that common genetic variation, i.e. variants present at minor
allele frequencies > 5 % in human populations, might explain most or all
of the heritability
of common complex
disease.
The identification
of a single
disease allele in 3 related myeloid
diseases suggests that the JAK2V617F mutation may be important in the pathogenesis
of additional hematopoietic malignancies.
Our objective is to generate a resource that facilitates research into human immune - related
diseases by creating a comprehensive database
of cell type - and
allele - specific epigenomic and transcriptomic data for the immunology community.
These mutant kinases are attractive therapeutic targets, as demonstrated by the efficacy
of imatinib in BCR - ABL — positive chronic myelogenous leukemia (CML), 5 as well as in MPD associated with activating
alleles involving PDGFRA or PDGFRB.2, 6,7 In addition, activating mutations in the FLT3 receptor tyrosine kinase are the most common genetic event in acute myeloid leukemia (AML), and specific inhibitors
of the FMS - like tyrosine kinase 3 (FLT3) have entered late - stage clinical trials.8 Although mutations in tyrosine kinases and in other genes have been identified in a subset
of MPD and AML, in many cases the genetic events that contribute to the molecular pathogenesis
of these
diseases remain unknown.
The impact
of a common risk
allele with
disease risk is often modest, as is its impact on clinical care.
The association
of an
allele with
disease is a measure
of statistical, not clinical significance.
Further, there are currently no validated ways
of combining multiple risk
alleles for the same
disease.
Now a research team led by Broad Institute Imaging Platform director Anne Carpenter and postdoctoral fellow Mohammad Rohban has shown that a high - throughput, computerized imaging technique for studying morphology, called Cell Painting, can provide insight into the cellular roles
of genes or
disease - linked gene
alleles whose function or impact is unknown.
The identification
of a single
disease allele in 3 different MPDs prompted us to search for JAK2V617F mutations in CMML / aCML, AML, and MDS.
Martins RN, Association
of alleles carried at TNFA - 850 and BAT1 - 22 with Alzheimer's
disease.
Polymorphisms in five
of 15 genes (33 %) encoding molecules known to primarily influence pancreatic beta - cell function - ABCC8 (sulphonylurea receptor), KCNJ11 (KIR6.2), SLC2A2 (GLUT2), HNF4A (HNF4alpha), and INS (insulin)- significantly altered
disease risk, and in three genes, the risk
allele, haplotype, or both had a biologically consistent effect on a relevant physiological trait in the QT study.
We imputed these variants into 104,220 individuals down to a minor
allele frequency
of 0.1 % and found a recessive frameshift mutation in MYL4 that causes early - onset atrial fibrillation, several mutations in ABCB4 that increase risk
of liver
diseases and an intronic variant in GNAS associating with increased thyroid - stimulating hormone levels when maternally inherited.