Recent breakthroughs in evolutionary genomics show that a burst
of gene duplications occurred in the human lineage during its separation from non-human primates approximately 6 million years ago (Bailey et al., 2002; Fortna et al., 2004; Marques - Bonet et al., 2009).
We found an excess
of gene duplications in the East African lineage compared to tilapia and other teleosts, an abundance of non-coding element divergence, accelerated coding sequence evolution, expression divergence associated with transposable element insertions, and regulation by novel microRNAs.
Compared with the ancestral lineage, the East African cichlid genomes possess: an excess
of gene duplications; alterations in regulatory, non-protein-coding elements in the genome; accelerated evolution of protein - coding elements, especially in genes for pigmentation; and other distinct features that affect gene expression, such as insertions of transposable elements and regulation by novel microRNAs.
Other recent work has questioned the consequences
of gene duplications in flowering plants as well.
But you asked me right, the importance
of gene duplication; most — I say, most, [which] is a rough number — but a very large number of the genes that carry out functions in our body are parts of [the] family of the genes, members of [the] family of the genes that have expanded by gene duplication.
Based largely on studies of snakes, spiders and other species dangerous to our own, it is thought that most venom genes arise through the mechanism
of gene duplication followed by mutation and repurposing (which scientists refer to as neofunctionalization).
In biological systems in particular, this scale ‐ free addition of new nodes is likely a consequence
of gene duplication (Qian et al, 2001), and is also affected by alternate splicing and posttranslational modification in protein networks (Qian et al, 2001; Bhan et al, 2002; Pastor ‐ Satorras et al, 2003; Vazquez et al, 2003), as well as the variable chemical versatility of the metabolic intermediates in metabolic networks.
Therefore, herpesviruses are an attractive model to study viral genome evolution at the levels
of gene duplication and protein domain rearrangement.
In his research, Dr. Torres examines the properties of plant polyploidy (genome doubling), the concomitant phenomenon
of gene duplication, and the evolution of genes, gene families, chromosomes, and genomes following genome doubling in angiosperms.
During her graduate studies she investigated the contribution
of gene duplication to the origin and evolution of human phenotypes.
One particularly surprising finding observed in sequences from chromosomes 2 and 4 was the amount
of gene duplication.
Not exact matches
Not sure what you mean by «genetic information», but evolution requires changes in the
genes of the next generation
of organism, which is exactly what happens with
gene duplication, transposition, etc..
Lenski's E.coli show a
duplication of the anaerobic Cit
gene.
At the heart
of your Behe article are two concessions which simply don't support ID: 1) the ability
of evolution to produce functional novelty via
gene duplication / mutation and exaptation exists; and 2) that evidence
of «new information» in the form
of «new Functional Coded elemenTs, or «FCTs»» also exists.
Women who convert more codeine to morphine have a
duplication of the
gene encoding for cytochrome P450 2D6.
In this cycle, new
gene copies often arise by
gene duplication, with the copies persisting or adapting into new roles within the genome for varying lengths
of time, or dying off and being lost randomly.
This finding suggests that the homologous region may have resulted from a
duplication of an ancestral
gene and that the two
genes evolved further by recruitment
of exons from other
genes, which provided the specific functional domains
of the LDL receptor and the EGF precursor.
Rather than supporting a genome
duplication event at the time when yeast evolved to have twice the number
of chromosomes, their data indicated that the duplicated
genes had begun to diverge long before.
The work
of Marcet - Houben and Gabaldón revealed that, for yeast, hybridization was indeed behind the
duplication of some
genes.
Unexpectedly, they show that the appearance
of duplicated
genes was not caused by a simple
duplication of the whole genome but rather by a mating («hybridization») event between two different species.
Pollock says that snakes» genomes may be unusually prone to change because they contain many repeated sequences that promote misalignment
of chromosomes and so make
gene duplications more common.
His coauthor is Chris Hittinger, and the article is called the «
Gene Duplication and the Adaptive Evolution
of a Classic Genetic Switch».
And what we did is, in order to figure all this out, sort
of trace the path
of evolution, we did a whole bunch
of sort
of, swapping experiments, where we swappedGAL1 for GAL3and we swapped the ancestral protein type
of protein in for GAL1or for GAL3, and we even swapped the GAL1and GAL3in for the ancestral protein, in another yeast that didn't have the
duplication take place; and from this whole series
of experiments, we really expected to find out pretty much how the proteins have changed; and the surprise was that most
of [the] adaptive change that had taken place wasn't in the protein, it was in how the two
genes were regulated.
So what this shows is it sort
of gives us a window to say, well, one way the
gene duplication allows novelty or specialization or adaptation is by having more genetic parts to work with — each part can be optimized and specialized in a way that if you just have one part, you can do.
After the
gene was duplicated — now I just mention [ed] that
duplication takes place all
of the time, they are common sort
of genetic accidents — but after the
genes were duplicated, now there was the opportunity to divide the labor that was once stored by a single
gene; now divide that labor into two
genes, and what happened is, a series a mutations have taken place that has optimized each role — that the regulatory sensor role
of GAL3 and the enzymatic - converting role
of GAL1.
Indeed using genome - wide transcriptional profiling, the researchers revealed that expression
of clipped H3.3 silences
genes that regulate the division and
duplication of a cell.
Steve: So, this
gene duplication business is so interesting and it has such profound importance in evolution and researchers realize that, but I don't think that news has really gotten out to the general public in a lot
of ways that in the modern evolutionary theory play book,
gene duplication has a really big role.
: The Public Health Threat
of Animal Diseases; and
Gene Duplication in Evolution
In fact, one
of the most common outcomes, now appreciated about
gene duplication, is a little bit disappointing, which is really just the old job gets done by two
genes, so they really just share the old job; its like, now you -LSB-'ve] got two lazy workers instead
of one really efficient one.
Domain recombination resulted in greater diversity in pathway response dynamics than did
duplication of genes,
of single domains, or
of two unlinked domains.
Because
of later
gene duplications and other processes, these 8,600 homologous
genes correspond to at least 14,000
genes, or approximately 70 %,
of the current human genome.
I was fascinated to read how the double
duplication of the SRGAP2
gene, which helps drive development
of the brain's neocortex, appears to have propelled our ancestors» development at two distinct times during the past few million years (12 May, p 10).
In your fascinating article, Evan Eichler states that
duplications of the SRGAP2
gene, which helps drive development
of the neocortex,...
The other two
genes appeared to be paralogs —
genes that are the result
of a
duplication event in the DNA.
«While
gene duplication and alternative splicing are typically invoked as major mechanisms underpinning protein neofunctionalization, this study suggests that the process
of co-option should be re-evaluated as a potentially important method by which
genes can acquire novel functions.»
«The evolution
of the fan coincides with the
duplication of that
gene,» Khila said, also noting that the expression
of the
gene in the tip
of the leg is significant.
Gene moonlighting can occur merely through changes in expression, which may result from as little as a single mutation; it does not require the meandering process
of random alteration and selection implied by the
duplication and neofunctionalization model.
For instance, his team found that around 2000
genes are expressed at levels higher than those
of normal human tissues because
of the
duplications.
Researchers checked the genomes
of 150 patients with schizophrenia and those
of 268 healthy people, looking for large
duplications and deletions
of genetic material that disrupted the function
of a
gene.
In fact, less than 10 percent
of the toxin
genes clearly arose through
duplication and mutation.
The genomic data provides a strong evidence from DNA level to illustrate why Chinese alligator can hold its breath under water for long periods
of time, such as the
duplication of the bicarbonate - binding hemoglobin
gene, positively selected energy metabolism, and others.
Instead they suggest that the
duplication of individual
genes, including the caffeine ones, spurred innovations.
Our data suggest that these passive mechanisms,
gene duplication and extinction, could represent an important source
of genetic incompatibilities across all taxa.
«We found that in all [four - legged animals], there is a
duplication of the ancestral
gene.»
«In order for something to evolve,
duplication of a
gene is the most important event,» Hsu says.
On January 9, a team, led by researchers at Massachusetts General Hospital (MGH) and Children's Hospital Boston, announced that it had found copy number variations — deletions
of duplications of segments
of genetic code that alter the number
of copies
of a
gene a person carries — in 12
of 1,400 autism sufferers it was studying.
Both
of the new studies found that copy number events involving either
duplication or deletion
of the 25 to 30 chromosome - 16
genes — several
of which are known to play a role in the developing brain — appear to cause autism.
A closer look revealed that the heavily - duplicated
gene contained its own
duplications: six copies
of a domain called DUF1220.
Pairwise alignments were calculated using Shuffle - LAGAN (window size, 400 bp; step size 40 bp; translated anchoring), a glocal alignment algorithm that is able to calculate optimal alignments by using both local alignments and global maps
of sequence rearrangements (e.g.
duplications of the fiber
gene in adenovirus genomes with 2 fibers)[57].
Although none
of the German Neolithic samples carries the copy number expansion
of the AMY2B
gene associated with starch digestion, we find that this
gene is present in three copies in NGD, though this is due to a large segmental
duplication that is shared with multiple modern dogs, an event separate from the tandem AMY2B
duplications.