But researchers report today that they've figured out how to predict the structures of hundreds of unmapped proteins by gleaning insights from one of the strangest of places: «metagenomics» projects that sequence DNA from broad swaths
of microbes in the soils and seas.
DeBruyn, who typically studies the communities
of microbes in soils, is one of a handful of researchers probing such communities in and on cadavers.
Large - scale agriculture is changing the makeup
of microbes in the soil, rendering it less biologically diverse.
«However, the balance
of the microbes in the soil can be disturbed when seagrass beds start to decline due to other pressures, helping the alga invade new areas.»
Certain types
of microbes in the soil seemed to speed plant flowering time, the team found, while others, such as members of the Proteobacteria phylum, slowed it down.
Not exact matches
What it does: This
microbe is extremely versatile and can live
in a wide range
of environments, including
soil, water, animals, plants, sewage, and hospitals
in addition to humans.
Joey, It's my understanding that the selenium content
of butter would relate closely to the amount avaiable
in the particualr
soil the cows ate their grass from and the
microbes in that
soil.....
California winegrowers use cover crops and compost
in the vineyards to enrich healthy
soils with biomass and vibrant populations
of microbes and worms and to prevent erosion and attract helpful insects that prey on pests.
Secret to terroir may lie
in bacteria, say scientists: Researchers
in the U.S. have published a study suggesting that the characteristics associated with terroir could have more to do with
microbes found around the root system
of a vine, than the
soil that it grows
in...
There is a growing body
of evidence suggesting that early contact with some
of the infectious
microbes found
in soil can result
in a lower risk
of heart disease later
in life.
So little can survive there that scientists have wondered whether snippets
of DNA found
in the
soil are just part
of the desiccated skeletons
of long - dead
microbes or traces
of hunkered - down but still living colonies.
Warmer temperatures shorten the lifespan
of soil microbes and this may affect
soil carbon storage, according to a new NSF - funded study published
in Nature Climate Change this week.
Most
of the life
in those biofilms was benign, made up
of the kinds
of microbes commonly associated with
soil or water.
A Harvard team
of faculty and Africanstudents have tapped into
soil - dwelling
microbes in order to provideelectricity for families
in Tanzania.
When it does rain, the
microbes become metabolically active, setting
in motion a cascade
of activity that dramatically alters both the community structure and the
soil chemistry.
Previous experiments by Jansson and collaborators have shown that thawing frozen
soil in the lab quickly leads to a burst
of methane production, along with a change
in the community
of microbes.
In the first study
of its kind, Rice University scientists have used synthetic biology to study how a popular
soil amendment called «biochar» can interfere with the chemical signals that some
microbes use to communicate.
They found an undiscovered diversity
of microbes in Arctic
soils and were able to describe several completely novel
microbes in each type
of soil.
Understanding how microbial communities
in the biocrusts adapt to their harsh environments could provide important clues to help shed light on the roles
of soil microbes in the global carbon cycle.
In addition to helping plants procure nutrients, exudates are food sources for the
microbes that are an important part
of the
soil microbiome.
This huge carbon flux from
soil, which is due to the natural respiration
of soil microbes and plant roots, begs one
of the central questions
in climate change science.
Research published
in Science found that increased levels
of carbon dioxide
in the atmosphere cause
soil microbes to produce more carbon dioxide, accelerating climate change.
Research published
in Science today found that increased levels
of carbon dioxide
in the atmosphere cause
soil microbes to produce more carbon dioxide, accelerating climate change.
A new climate change modeling tool developed by scientists at Indiana University, Princeton University and the National Oceanographic and Atmospheric Administration finds that carbon dioxide removal from the atmosphere owing to greater plant growth from rising CO2 levels will be partially offset by changes
in the activity
of soil microbes that derive their energy from plant root growth.
«To not consider how
microbes influence
soil carbon
in offsetting ways, promoting losses through enhanced decomposition but gains by protecting
soil carbon, would lead to overestimates or underestimates
of the role
soils play
in influencing global climate.»
Nathan Cude works
in Novozymes» agbiotech division
in Durham, North Carolina
in the microbial discovery group, which isolates and identifies thousands
of microbes collected from
soil samples around the United States.
The research is
in the Proceedings
of the Royal Society B. [Kelly S. Ramirez et al, Biogeographic patterns
in below - ground diversity
in New York City's Central Park are similar to those observed globally] Investigators looked at 596 separate
soil samples from the park and found thousands
of different types
of microbes.
Their aversion probably occurs because the microbial enemies
of a given kind
of tree set up camp
in the
soil surrounding it, Mangan says, and «those
microbes are more detrimental to the tree's own seedlings.»
The researchers note that their computational approach can also be used to analyze microbial ecosystems found
in soil, ocean, lakes and more to detect universal dynamics
of microbes in these environments as well.
Their results show that the presence
of cheating
microbes slows down the decomposition
of organic material, so that it accumulates
in soil.
This brings down the number
of enzymes capable
of decomposing dead
microbes, per newly formed microbial remains, which consequently accumulate
in the
soil.
That waste, which contains
microbes that can make humans sick, is collected
in open pits or sprayed on fields as fertilizer, risking contamination
of the air, water, and
soil.
The study thereby introduces a new possible control mechanism — enabled by social interactions among individual
microbes — that may help to explain the massive reservoir
of carbon and other nutrients
in soil.
Microbes in the
soil digest some
of what remains to produce nitrogen oxides, or NOx.
In one experiment, Dangl's team found that Arabidopsis plants with mutant versions of the PHR1 gene not only had impaired phosphate stress responses, but also developed different communities of microbes in and around their roots when grown in a local native North Carolina soi
In one experiment, Dangl's team found that Arabidopsis plants with mutant versions
of the PHR1 gene not only had impaired phosphate stress responses, but also developed different communities
of microbes in and around their roots when grown in a local native North Carolina soi
in and around their roots when grown
in a local native North Carolina soi
in a local native North Carolina
soil.
«A real opportunity for India's next generation
of sustainable agriculture will be this area
of plant probiotics, using
microbes that naturally occur
in the
soil to help plants,» Bais said.
«Tropical
soil microbes are responsible for the nearly complete decomposition
of leaf plant litter
in as little as eighteen months,» she says.
In past projects, researchers in Brady's lab have mined microbes from soil in search of naturally occurring therapeutic agent
In past projects, researchers
in Brady's lab have mined microbes from soil in search of naturally occurring therapeutic agent
in Brady's lab have mined
microbes from
soil in search of naturally occurring therapeutic agent
in search
of naturally occurring therapeutic agents.
An expedition into the Luquillo Experimental Forest
in Puerto Rico by JBEI and Berkeley Lab researchers led to the identification
of a
soil microbe that utilizes lignin as its sole source
of carbon.
«It's a purer taste with more sense
of the terroir, because when you replace pesticides with labor, you have hands - on care for the vines and you improve the composition
of the
soil and you get back all the life — the
microbes, insects, bees and worms that you need
in agriculture.»
Northen and his collaborators deployed a set
of tools that he calls «exometabolomics» which harnesses the analytical capabilities
of the latest mass spectrometry techniques to quantitatively measure how each
microbes and the biocrust community transforms complex mixtures
of metabolites,
in this case, from
soil.
Understanding more about the interactions between the microbial communities — also called «microbiomes» —
in the biocrusts and their adaptations to their harsh environments could provide important clues to help shed light on the roles
of soil microbes in the global carbon cycle.
The team suspects that differences
in decomposing plant material might have led to changes over time
in the community
of microbes that process nitrogen
in the
soil and make it available to plants.
«Essentially,
microbes won't eat each other's lunch if they depend on the other for a specific metabolite,» Northen said, describing this possible mechanism
in support
of soil biodiversity.
Much like humans, whose guts and skin are teeming with
microbes, the
soil below plants and trees contains a unique cornucopia
of microscopic creatures that help the tree take
in nutrients and water.
One
of the strongest greenhouse gases, methane comes from agriculture and fossil fuel use, as well as natural sources such as
microbes in saturated wetland
soils.
It found that for trees
in the comfortable middle
of their range, down near the base
of a mountain, their offspring thrived nearby
in the rich,
microbe - filled
soil collected right below their parent.
To make matters worse, some
of those excess nitrate molecules
in the
soil undergo another chemical change:
Microbes help turn nitrate into gaseous nitrous oxide, which has roughly 300 times the global warming potential
of carbon dioxide.
To test the antibacterial properties
of these
soil microbes, the team let each
of them duel
in a lab dish with Staphylococcus aureus, a cause
of serious skin and respiratory infections.
Since changes
in the
soil nitrogen cycle are driven by
microbes, could bacteria associated with invasive species not only be responsible for the observed changes
in soil nutrient concentrations, but also for enabling the continued growth and persistence
of the invader species?