Sentences with phrase «on gene annotations»

Not exact matches

In a study published online in Genome Research, researchers devised a strategy for genome - wide annotation of primary miRNA transcripts, providing extensive new annotations in human and mouse, and shedding light on mechanisms of regulation of microRNA gene expression.

Using the GOMiner algorithm, two independent category structures (biologic process and molecular function) based on the 1178 rat genes represented on the microarray (of which 923 currently carry GO annotations) were initially constructed and used as Query gene files.

Functional annotations from Ensembl BioMart, TAIR10, Phytozome, and MaizeGDB were based on homologs determined through Ensembl Compara gene trees (gramene.org).

Gene Ontology enrichment analysis was performed using the GOStats package in R (Falcon and Gentleman, 2007) based on Setaria italica GO annotations available at Phytozome.

Draft genome annotation was transferred from P. vivax P01 using RATT21 (version 1), and supplemented with the output of the Augustus22 gene finder, trained on P. vivax P01 as described in23.

Conclusions We present an accurate and comprehensive annotation of the oil palm genome, focusing on analysis of important categories of genes (GC3 - rich and intronless), as well as those associated with important functions, such as FA biosynthesis and disease resistance.

This application uses calculated break points to determine fusion genes based on the latest annotation for genomic sequence information, and where relevant the structural variation (SV) events are annotated with predicted RNA and protein sequences.

Gene Ontology terms were computationally assigned to the genes based on Drosophila GO annotations via sequence homology, or Pfam domain matches above the trusted cutoff.

In 1997, when few genome sequences were available, Hieter helped create XREFdb, a public database that linked the functional annotations of genes studied in model organisms with the phenotypic annotations on the human and mouse genetic maps.

He is head of the collection of EMBL - EBI resources focused on Genes, Genomes and Variation and in this role provides strategic leadership of the six faculty groups that together provide all of EBI's genome annotation resources.

Due to the more comprehensive GO term annotation of the mouse genome, we attributed GO terms to rabbit genes based on one - to - one orthology relationships with mouse genes.

MalaCards is an integrated database of human maladies and their annotations, modeled on the architecture and richness of the popular GeneCards database of human genes.

The functional annotations of all the clusters with ≥ 10 transcripts, which were obtained using the on GO classification categories of the g: Profiler tool for all the genes in each cluster, are shown in Table 2 (for downregulated genes during ES cell differentiation) and Table 3 (for upregulated genes).