These methods can identify the genomic locations and density of transposon insertions in saturated transposon mutant libraries and can be used to make inferences
on gene function.
After decades of extrapolating about gene function in trees based
on gene function in a tiny, less complex plant, a team of scientists has sequenced whole genomes — determined the DNA sequence of all the genes — from 544 unrelated trees of the same species.
Most mutations are neutral, having no effect
on gene function; others are harmful, such as the ones that cause inherited diseases like cystic fibrosis.
Phevor works by using algorithms that combine the probabilities of gene mutations being involved in a disease with databases of phenotypes, or the physical manifestation of a disease, and information
on gene functions.
Not exact matches
The advance is based
on a technique that allows scientists to narrow in
on a specific
gene and cut - and - paste bits of DNA to change its
function, known as CRISPR - Cas9.
This team also discovered 3,200
genes that had fewer loss - of -
function or missense mutations than would be expected suggesting that these are likely disease - causing variants that are rare or absent in the population because of their detrimental effect
on human health.
Our genome is nearly identical to the chimpanzee genome, a little less identical to the gorilla genome, a little less identical to the orangutan genome, and so
on — and this correspondence is present in ways that are not needed for
function (such as the location of shared genetic defects, the order of
genes on chromosomes, and
on and
on).
Using
gene - sequencing technology, researchers established that the precise segment of the pup's DNA «switched
on» by the act of grooming was the part that controlled the future
function of the hippocampus, which processes stress hormones.
A
gene on the Y chromosome becomes active late in the sixth week,
functioning for only a few days to tell the embryo to become a boy.
These proteins constantly move along the strands of our DNA, turning specific
genes on and off to make sure cells
function as expected.
Biological form and
function is created from and is passed
on to the next generation by
genes, which are the primary units of inheritance.
After determining the proper dosage of tamoxifen — an early trial resulted in a number of mouse deaths due to overactivation of Mecp2 — researchers settled
on a four - week regimen of ramping up the
gene's
function.
Epigenetic tags help tell
genes — stretches of DNA that act as biological instruction manuals — when to switch «
on» and «off,» ultimately determining cell type and
function.
When similar analysis was performed
on the db mice, it was found that the disrupted db
gene was responsible for encoding a protein that
functions as a leptin receptor: When it binds circulating leptin at the cell surface, it sets in motion a biochemical cascade inside the cell.
When a new
gene arises
on the X chromosome (males have one X chromosome and females two) it is likely to cease
functioning much faster than
genes that arise
on other chromosomes.
The mutation is
on the X chromosome so female children with two X chromosomes should have at least one
functioning copy of the
gene.
«CRISPR -
on is a tool that will be very useful for studying many biological processes, particularly for studying
gene functions and
gene networks,» says Whitehead Founding Member Rudolf Jaenisch.
Representatives from both the scientific and legal communities expressed outrage that patent rights to
genes could be awarded
on the basis of work that provided no insight into how the
gene might
function.
The most famous is the
gene ontology, in which categories are assigned to
genes based
on their cellular location, molecular
function, and biological process.
«This is first
gene to have completely different
functions depending
on which parent it came from»
FOR the first time, an imprinted
gene has been shown to have different
functions depending
on whether it is inherited from the mother or father.
To determine the effect of mutations that reduce TET2
function in abnormal stem cells, the research team genetically engineered mice such that the scientists could switch the TET2
gene on or off.
Dr Antonio Pardiñas, first author of the study, said: «We show for the first time that genetic variants that do not severely impact
gene function, but presumably have a more subtle impact
on these critical
genes, increase risk for developing schizophrenia.»
A decade of post-genomic biology has also focused new attention
on the regions outside protein - coding
genes, many of which are likely to have key
functions, through regulating the expression of protein - coding
genes and by making a slew of non-coding RNA molecules.
The article published
on the journal Molecular Biology and Evolution provides the framework for posing new hypotheses
on the phylogenetic relations among poriferans, determining
gene function in sponges and the early evolution of molecular complexity in metazoans.
For his part, Collins, who has led NIH since 2009 and been kept
on by the Trump administration, pointed to an array of promising NIH activities, including the development of new technologies to provide insights into human brain circuitry and
function through the Brain Research through Advancing Innovative Neuroethologies (BRAIN initiative) and the use of the
gene - editing tool CRISPR - Cas9 to correct mutations and clear the way to develop and test a «curative therapy» for the first molecular disease: sickle cell disease.
The two
genes implicated — GNAQ and GNA11 — code for proteins (known as G proteins) that normally
function as molecular
on - off switches, regulating the passage of information from the outside to the inside of a cell.
The institute will combine under one roof the various kinds of expertise needed to perform studies of
gene function on a large scale.
Potentially explaining why even healthy brains don't
function well with age, Salk researchers have discovered that
genes that are switched
on early in brain development to sever connections between neurons as the brain fine - tunes, are again activated in aging neuronal support cells called astrocytes.
Monsanto's newest drought - tolerant product, Drought Guard, relies
on a
gene that creates a chaperone protein to coat a plant's RNA during stressful conditions and maintain the plant's normal cell
functions, while Syngenta's hybrid contains novel drought - tolerant
gene combinations.
«The power of this study is that we looked at
genes discovered to be over-expressed in patients» tumors and determined their
function in kidney cancer, which has not been done
on a large scale before,» he says.
They identified previously unknown recurrent loss - of -
function mutations that target
genes regulating epigenetic pathways — ones that act
on how tightly or loosely chromosomes are wound and thus accessible for
genes to be expressed.
Another doubled - up region contains enhancers that turn
on some
genes in the cerebellum, a part of the brain that coordinates movement, speech and performs other important
functions.
IMPC builds
on the groundwork and achievements of EUMODIC in establishing the procedures and processes to identify and catalogue the
function of
genes.
Our life experiences exert a profound influence
on how we age and can even alter the ways
genes function without changing the underlying DNA sequence; these genetic changes are called epigenetic traits.
Traditionally,
gene function was determined one
gene at a time, but today's microarray technology enables scientists to monitor the expression of tens of thousands of
genes on a single glass slide.
Computer aided modeling of how the Bcl3
gene functions inside the cell allowed the group to identify a pocket
on the surface of Bcl3 essential for its
function.
The
function of these
genes were involved in molecular maintenance strategies, such as DNA repair, chromosomal maintenance, immune response and programmed cell death The authors argue that the «slower rate of change in these
functions is consistent with increased constraint
on somatic cell maintenance as would be required in these relatively long - lived and large - bodied mammals, illustrated by the additional large and long - lived species with slower rates in these
genes (e.g. double - strand break repair
gene XRCC4 is also highly constrained in elephant.»
If we knew what those
functions were, then maybe we'd have a better way of manipulating these cells, so I'd be keen
on performing some experiments to explore what these other
genes do.
Matches between new
genes from other species, including mammals, and these E. coli sequences have often helped researchers pin a name and
function on their discoveries.
Building
on this concept, Sushant Patkar of the University of Maryland and colleagues hypothesized that alterations in protein interaction networks in breast cancer cells may change the
function of individual
genes.
«We knew that Smchd1 was an epigenetic suppressor — a factor that switches off
genes that are unnecessary for that particular cells»
function — but we were in the dark about where and how it was acting
on the DNA.»
In the first study to show that the sensations from sampled alcohol vary as a
function of genetics, researchers focused
on three chemosensory
genes — two bitter - taste receptor
genes known as TAS2R13 and TAS2R38 and a burn receptor
gene, TRPV1.
Previous research has shown that a protein produced by a single
gene can potentially have different
functions in a cell depending
on the proteins with which it interacts.
HDAC3
functions on the epigenome, the molecular component of the cell nucleus that specifies which
genes are expressed — and just as importantly, which ones are not — in different cells of the body.
The body relies
on cells to process and store energy, and changes in
genes that regulate these
functions can cause an imbalance that leads to excessive energy storage and weight gain.
Some duplicated
genes were lost over time but others took
on new
functions, including contributions to the development of floral organs.
Named after the IBM Blue
Gene supercomputer it relies
on, the Blue Brain Project has started modelling — in every detail — the cellular infrastructure and electrophysiological interactions within the cerebral neocortex, which represents about 80 % of the brain and is believed to house cognitive
functions such as language and conscious thought.
«First trial of
gene therapy for cystic fibrosis to show beneficial effect
on lung
function.»
The light - activated genetic switch could be used to turn
genes on and off in
gene therapies; to turn off
gene expression in future cancer therapies; and to help track and understand
gene function in specific locations in the human body.